DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and gria2a

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_005170953.1 Gene:gria2a / 170450 ZFINID:ZDB-GENE-020125-3 Length:893 Species:Danio rerio


Alignment Length:446 Identity:104/446 - (23%)
Similarity:185/446 - (41%) Gaps:63/446 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   119 LKKKFNFTYEVVVPQDNIIGSPSDFDRSLIEMVNS---STVDLAAAFIPSLSDQRSFVYYSTTTL 180
            :.|...|.|::.:..|...|:.....:....||..   ...|:|.|.:.....:...:.:|...:
Zfish   446 IAKHCGFKYQLRIVADGKYGARDAETKIWNGMVGELVYGKADIAVAPLTITLVREEVIDFSKPFM 510

  Fly   181 DEGEWIMVMQRPRESASG-SGLLAPFEFWVWILILVSLLAVGPIIYALIILRNRLT--------- 235
            ..|..||: ::|::|..| ...|.|..:.:|:.|:.:.:.|..:::    |.:|.:         
Zfish   511 SLGISIMI-KKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLF----LVSRFSPYEWHTEEF 570

  Fly   236 GDGQQTP------YSLGHCAWFVYGALMKQGSTLSPIADSTRLLFATWWIFITILTSFYTANLTA 294
            .|||..|      :.:.:..||..||.|:||..:||.:.|.|::...||.|..|:.|.|||||.|
Zfish   571 EDGQLGPSESTNEFGIFNSLWFSLGAFMQQGCDISPRSLSGRIVGGVWWFFTLIIISSYTANLAA 635

  Fly   295 FLTLSKFTLPYNTVNDILTKNK-HFVSMRGGGVEYAIRTTNESLSMLNRMIQNNYAVFSDETNDT 358
            |||:.:...|..:..|:..:.: .:.::..|..:...|  ...:::.::|.|     :......:
Zfish   636 FLTVERMVSPIESAEDLAKQTEIAYGTLDAGSTKEFFR--RSKIALFDKMWQ-----YMKSAEPS 693

  Fly   359 YNLQNYVEKNGYVFVRDRPAINIMLYRDYLYRKTVS-FSDEKVHCPFAMAKEPFLKKKRTFAYPI 422
            ..::|.||  |.:.||....    .|. ||...|:: :.:::..|...........|....|.|.
Zfish   694 VFVKNTVE--GVLRVRKSKG----KYA-YLLESTMNEYIEQRKPCDTMKVGGNLDSKGYGIATPK 751

  Fly   423 GSNLSQLFDPELLHLVESGIVKHLSKRNLPSAEICPQDLGGTERQLRNGDLMMT-----YYIMLA 482
            ||.|....:..:|.|.|.|::..|..:.......|..  ||.|.:.:...|.::     :||::.
Zfish   752 GSALRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGS--GGGESKEKTSALSLSNVAGVFYILVG 814

  Fly   483 GFATALAVFSTELMFRYVNSRQEANKW-----------ARHGI-GRT-PNGQSVAP 525
            |...|:.|...|..::   ||.||.:.           ||..| |.| .||:.:.|
Zfish   815 GLGLAMLVALVEFCYK---SRAEAKRMKMTFTDAMRSKARLSITGSTGENGRVLTP 867

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 77/338 (23%)
gria2aXP_005170953.1 Periplasmic_Binding_Protein_Type_1 23..391 CDD:299141
ANF_receptor 51..373 CDD:279440
PBP2_iGluR_AMPA 406..783 CDD:270433 81/355 (23%)
Lig_chan 538..816 CDD:278489 69/297 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591387
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18966
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.840

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