DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and Grin2b

DIOPT Version :10

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_032197.3 Gene:Grin2b / 14812 MGIID:95821 Length:1482 Species:Mus musculus


Alignment Length:503 Identity:120/503 - (23%)
Similarity:196/503 - (38%) Gaps:126/503 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 RKKPKLREMLDWIGGKHLRIATLEDFPLSYTEVLE--NGTRVGHGVSFQ---------------- 114
            |..|:..|..|    .||.|.|||:.|....|.::  :||.:.:.|..|                
Mouse   393 RMCPETEEQED----DHLSIVTLEEAPFVIVESVDPLSGTCMRNTVPCQKRIISENKTDEEPGYI 453

  Fly   115 -------IIDFLK---KKFNFTYEVVVPQDNIIGSPSDFDRSLIEMVNSSTVDLAAAFIPSL--S 167
                   .||.||   |...|||::.:..:...|  ...:.:...|:....:..|...:.||  :
Mouse   454 KKCCKGFCIDILKKISKSVKFTYDLYLVTNGKHG--KKINGTWNGMIGEVVMKRAYMAVGSLTIN 516

  Fly   168 DQRS-FVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFWVWILILVSLLAVGPIIYALIILR 231
            ::|| .|.:|...::.|..:|| .|...:.|.|..|.||...||:::.|.||.|..:  |:.:..
Mouse   517 EERSEVVDFSVPFIETGISVMV-SRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAV--AVFVFE 578

  Fly   232 -------NRLTGDGQQ---TPYSLGHCAWFVYGALMKQGSTL-SPIADSTRLLFATWWIFITILT 285
                   ||...||::   ..:::|...|.::|.:......: :|...:::::.:.|..|..|..
Mouse   579 YFSPVGYNRCLADGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFL 643

  Fly   286 SFYTANLTAF------------LTLSKFTLPYNTVNDILTKNKHFVSMRGGGVEYAIRTTNESLS 338
            :.|||||.||            |:..||..|    || .:....|.::..|..|           
Mouse   644 ASYTANLAAFMIQEEYVDQVSGLSDKKFQRP----ND-FSPPFRFGTVPNGSTE----------- 692

  Fly   339 MLNRMIQNNYA---VFSDETNDTYNLQNYVE------KNGYV--FVRDRPAINIMLYRDYLYRKT 392
               |.|:||||   .:..:.|     |..|:      |.|.:  |:.|...:|.|..||. ..|.
Mouse   693 ---RNIRNNYAEMHAYMGKFN-----QRGVDDALLSLKTGKLDAFIYDAAVLNYMAGRDE-GCKL 748

  Fly   393 VSFSDEKVHCP----FAMAKEPFLKKKRTFAYPIGSNLSQLFD----PELLHLVESGIVKHLSKR 449
            |:....||...    .|:.|:...|::...|      :.|||.    .||..|..:||. |..|.
Mouse   749 VTIGSGKVFASTGYGIAIQKDSGWKRQVDLA------ILQLFGDGEMEELEALWLTGIC-HNEKN 806

  Fly   450 NLPSAEICPQDLGGTERQLRNGDLMMTYYIMLAGFATALAVFSTELMF 497
            .:.|:::...::.|            .:|::.|..|.:|..|..|.:|
Mouse   807 EVMSSQLDIDNMAG------------VFYMLGAAMALSLITFICEHLF 842

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Lig_chan-Glu_bd 83..192 CDD:463166 32/139 (23%)
Lig_chan 209..458 CDD:459656 70/290 (24%)
Grin2bNP_032197.3 PBP1_iGluR_NMDA_NR2 33..388 CDD:380601
PBP2_iGluR_NMDA_Nr2 403..803 CDD:270436 106/440 (24%)
NMDAR2_C 840..1482 CDD:463148 1/3 (33%)
Blue background indicates that the domain is not in the aligned region.

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