DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76b and Grin2a

DIOPT Version :10

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_032196.2 Gene:Grin2a / 14811 MGIID:95820 Length:1464 Species:Mus musculus


Alignment Length:492 Identity:105/492 - (21%)
Similarity:183/492 - (37%) Gaps:133/492 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 HLRIATLEDFPLSYTEVLE--------------------NGTRVG-------HGVSFQIIDFLKK 121
            ||.|.|||:.|....|.::                    |.|..|       .|....|:..|.:
Mouse   405 HLSIVTLEEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSR 469

  Fly   122 KFNFTYEVVVPQDNIIGSPSD--FDRSLIEMVNSSTVDLAAAFIPSLSDQRS-FVYYSTTTLDEG 183
            ...|||::.:..:...|...:  ::..:.|:|....|....:.  :::::|| .|.:|...::.|
Mouse   470 TVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSL--TINEERSEVVDFSVPFVETG 532

  Fly   184 EWIMVMQRPRESASGSGLLAPFEFWVWILILVSLLAVGPIIYALIIL---------RNRLTGDGQ 239
            ..:|| .|...:.|.|..|.||...||:::.|.||.|..|  |:.:.         ||...|...
Mouse   533 ISVMV-SRSNGTVSPSAFLEPFSASVWVMMFVMLLIVSAI--AVFVFEYFSPVGYNRNLAKGKAP 594

  Fly   240 QTP-YSLGHCAWFVYGALMKQGSTL-SPIADSTRLLFATWWIFITILTSFYTANLTAFLTLSKFT 302
            ..| :::|...|.::|.:......: :|...:::::.:.|..|..|..:.|||||.||:...:|.
Mouse   595 HGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEFV 659

  Fly   303 LPYNTVNDILTKNKH-------FVSMRGGGVEYAIRTTNESLSMLNRMIQNNYAVFSDETNDTYN 360
            .....::|...:..|       |.::..|..|              |.|:|||. :..:....:|
Mouse   660 DQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTE--------------RNIRNNYP-YMHQYMTKFN 709

  Fly   361 LQNYVE------KNGYV--FVRDRPAINIMLYRD-----------YLYRKTVSFSDEKVHCPFAM 406
             |..||      |.|.:  |:.|...:|....||           |::..|          .:.:
Mouse   710 -QRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATT----------GYGI 763

  Fly   407 AKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIVK-----------HLSKRNLPSAEICPQD 460
            |    |:|        ||...:..|..||..|..|.::           |..|..:.|:::...:
Mouse   764 A----LQK--------GSPWKRQIDLALLQFVGDGEMEELETLWLTGICHNEKNEVMSSQLDIDN 816

  Fly   461 LGGTERQLRNGDLMMTYYIMLAGFATALAVFSTELMF 497
            :.|            .:|::.|..|.:|..|..|.:|
Mouse   817 MAG------------VFYMLAAAMALSLITFIWEHLF 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Lig_chan-Glu_bd 83..192 CDD:463166 28/137 (20%)
Lig_chan 209..458 CDD:459656 63/296 (21%)
Grin2aNP_032196.2 PBP1_iGluR_NMDA_NR2 32..387 CDD:380601
PBP2_iGluR_NMDA_Nr2 403..802 CDD:270436 94/439 (21%)
NMDAR2_C 839..1464 CDD:463148 1/3 (33%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.