DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76b and Grin2a

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_032196.2 Gene:Grin2a / 14811 MGIID:95820 Length:1464 Species:Mus musculus


Alignment Length:492 Identity:105/492 - (21%)
Similarity:183/492 - (37%) Gaps:133/492 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 HLRIATLEDFPLSYTEVLE--------------------NGTRVG-------HGVSFQIIDFLKK 121
            ||.|.|||:.|....|.::                    |.|..|       .|....|:..|.:
Mouse   405 HLSIVTLEEAPFVIVEDIDPLTETCVRNTVPCRKFVKINNSTNEGMNVKKCCKGFCIDILKKLSR 469

  Fly   122 KFNFTYEVVVPQDNIIGSPSD--FDRSLIEMVNSSTVDLAAAFIPSLSDQRS-FVYYSTTTLDEG 183
            ...|||::.:..:...|...:  ::..:.|:|....|....:.  :::::|| .|.:|...::.|
Mouse   470 TVKFTYDLYLVTNGKHGKKVNNVWNGMIGEVVYQRAVMAVGSL--TINEERSEVVDFSVPFVETG 532

  Fly   184 EWIMVMQRPRESASGSGLLAPFEFWVWILILVSLLAVGPIIYALIIL---------RNRLTGDGQ 239
            ..:|| .|...:.|.|..|.||...||:::.|.||.|..|  |:.:.         ||...|...
Mouse   533 ISVMV-SRSNGTVSPSAFLEPFSASVWVMMFVMLLIVSAI--AVFVFEYFSPVGYNRNLAKGKAP 594

  Fly   240 QTP-YSLGHCAWFVYGALMKQGSTL-SPIADSTRLLFATWWIFITILTSFYTANLTAFLTLSKFT 302
            ..| :::|...|.::|.:......: :|...:::::.:.|..|..|..:.|||||.||:...:|.
Mouse   595 HGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYTANLAAFMIQEEFV 659

  Fly   303 LPYNTVNDILTKNKH-------FVSMRGGGVEYAIRTTNESLSMLNRMIQNNYAVFSDETNDTYN 360
            .....::|...:..|       |.::..|..|              |.|:|||. :..:....:|
Mouse   660 DQVTGLSDKKFQRPHDYSPPFRFGTVPNGSTE--------------RNIRNNYP-YMHQYMTKFN 709

  Fly   361 LQNYVE------KNGYV--FVRDRPAINIMLYRD-----------YLYRKTVSFSDEKVHCPFAM 406
             |..||      |.|.:  |:.|...:|....||           |::..|          .:.:
Mouse   710 -QRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCKLVTIGSGYIFATT----------GYGI 763

  Fly   407 AKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIVK-----------HLSKRNLPSAEICPQD 460
            |    |:|        ||...:..|..||..|..|.::           |..|..:.|:::...:
Mouse   764 A----LQK--------GSPWKRQIDLALLQFVGDGEMEELETLWLTGICHNEKNEVMSSQLDIDN 816

  Fly   461 LGGTERQLRNGDLMMTYYIMLAGFATALAVFSTELMF 497
            :.|            .:|::.|..|.:|..|..|.:|
Mouse   817 MAG------------VFYMLAAAMALSLITFIWEHLF 841

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 92/419 (22%)
Grin2aNP_032196.2 PBP1_iGluR_NMDA_NR2 32..392 CDD:107373
PBP2_iGluR_NMDA_Nr2 403..802 CDD:270436 94/439 (21%)
HisJ <458..>541 CDD:223904 18/85 (21%)
Lig_chan 556..828 CDD:278489 66/323 (20%)
NMDAR2_C 839..1464 CDD:287527 1/3 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846415
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

Return to query results.
Submit another query.