DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76b and Grid1

DIOPT Version :10

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_032192.2 Gene:Grid1 / 14803 MGIID:95812 Length:1009 Species:Mus musculus


Alignment Length:614 Identity:155/614 - (25%)
Similarity:246/614 - (40%) Gaps:107/614 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 REMLDWIGGKHLRIATL--EDFPLSYTEVLENGTRVGHGVSFQIIDFLKKKFNFTYEVVVPQDNI 136
            |.|...:.|..|::.|:  |.|.:....:|....|. .|.|..::|.|.|...|.||:....|..
Mouse   428 RPMGSRLQGLTLKVVTVLEEPFVMVAENILGQPKRY-KGFSIDVLDALAKALGFKYEIYQAPDGR 491

  Fly   137 IGSP---SDFDRSLIEMVNSSTVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASG 198
            .|..   :.::..:.|:: |...|||.:.|....::.|.|.:|...:|....|:: ::|.|..|.
Mouse   492 YGHQLHNTSWNGMIGELI-SKRADLAISAITITPERESVVDFSKRYMDYSVGILI-KKPEEKISI 554

  Fly   199 SGLLAPFEFWVWILILVSLLAVGPIIYALIILRNRLTGDGQQT--------PYSLGHCAWFVYGA 255
            ..|.|||:|.||..|..::..||.:|:.|    ||:.....|:        ..:|....|.||||
Mouse   555 FSLFAPFDFAVWACIAAAIPVVGVLIFVL----NRIQAVRSQSATQPRPSASATLHSAIWIVYGA 615

  Fly   256 LMKQGSTLSPIADSTRLLFATWWIFITILTSFYTANLTAFLTLSKFTLPYNTVNDILTK-NKHFV 319
            .::||...|..:.:.|::..:||:|..|:.|.|||||.||||:|:...|..|..|:..: ...:.
Mouse   616 FVQQGGESSVNSVAMRIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNPIRTFQDLSKQLEMSYG 680

  Fly   320 SMRGGGV-EY-AIRTTN-----ESLSMLNRMIQNNYAVFSDETNDTYNLQNYVEKNGYVFVRDRP 377
            ::|...| || ..:.||     .:.:.|.|.|..|....:..:|.:..::. .:|..|.|:.|  
Mouse   681 TVRDSAVYEYFRAKGTNPLEQDSTFAELWRTISKNGGADNCVSNPSEGIRK-AKKGNYAFLWD-- 742

  Fly   378 AINIMLYRDYLYRKTVSFSDEKVHCPFAMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGI 442
             :.::.|        .:.:|:  .|...:.......|....|...||....||...:|.|.::|.
Mouse   743 -VAVVEY--------AALTDD--DCSVTVIGNSISSKGYGIALQHGSPYRDLFSQRILELQDTGD 796

  Fly   443 VKHLSKRNLPSAEICPQDLGG-----TE-RQLRNGDLMMTYYIMLAGFATALAVFSTELMFRYVN 501
            :..|.::..|....|  ||..     || :.|:.......:.|:..|...|..|.:.||.:....
Mouse   797 LDVLKQKWWPHTGRC--DLTSHSSTQTEGKSLKLHSFAGVFCILAIGLLLACLVAALELWWNSNR 859

  Fly   502 SRQEANKWARHGIGRTPNGQSVAPSRWLRGWRRLNS------GHGQL-----------LGASTHG 549
            ..||..|     ..:..|.:.|        .||:||      .|.|:           :|.....
Mouse   860 CHQETPK-----EDKEVNLEQV--------HRRINSLMDEDIAHKQISPASIELSALEMGGLAPS 911

  Fly   550 QNVTPPPPYQ------SIF--NGGSHGDPLNRWRRPLANGNALGNGVLLGGDSEGGVRRLINGRD 606
            |.:.|...||      |.|  ...|||.     .|.|::|.:....:.|   |.......|..: 
Mouse   912 QALEPTREYQNTQLSVSTFLPEQSSHGT-----SRTLSSGPSSNLPLPL---SSSATMPSIQCK- 967

  Fly   607 YMVFRNPNG----QSQLVPVRSPSAALFQ 631
               .|:|||    ||   ||::|....||
Mouse   968 ---HRSPNGGLFRQS---PVKTPIPMSFQ 990

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Lig_chan-Glu_bd 83..192 CDD:463166 27/113 (24%)
Lig_chan 209..458 CDD:459656 67/264 (25%)
Grid1NP_032192.2 Interaction with CBLN1. /evidence=ECO:0000269|PubMed:27418511 21..436 2/7 (29%)
PBP1_iGluR_delta_1 25..425 CDD:380615
PBP2_iGluR_delta_1 436..806 CDD:270448 102/390 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..960 8/36 (22%)
Blue background indicates that the domain is not in the aligned region.

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