DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ir76b and Grik4

DIOPT Version :10

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_780690.2 Gene:Grik4 / 110637 MGIID:95817 Length:956 Species:Mus musculus


Alignment Length:550 Identity:135/550 - (24%)
Similarity:216/550 - (39%) Gaps:105/550 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    95 LSYTEVLEN-------------GTRVGHGVSFQIIDFLKKKFNFTYEVVVPQDNIIGSPSDFDRS 146
            |..|.:|||             |.....|....::..|.:...|.|::.:..|.:.|.| :.:.:
Mouse   418 LVVTTILENPYLMLKGNHQEMEGNDRYEGFCVDMLKELAEILRFNYKIRLVGDGVYGVP-EANGT 481

  Fly   147 LIEMVN---SSTVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFW 208
            ...||.   :...|||.|.:...:::...:.:|...:..|..|:..............|.||...
Mouse   482 WTGMVGELIARKADLAVAGLTITAEREKVIDFSKPFMTLGISILYRVHMGRRPGYFSFLDPFSPG 546

  Fly   209 VWILILVSLLAVGPIIYALIILRNRLTGDGQQTP--------------YSLGHCAWFVYGALMKQ 259
            ||:.:|::.|||..:::    |..|||.....:|              ||||:..||..|..|:|
Mouse   547 VWLFMLLAYLAVSCVLF----LVARLTPYEWYSPHPCAQGRCNLLVNQYSLGNSLWFPVGGFMQQ 607

  Fly   260 GSTLSPIADSTRLLFATWWIFITILTSFYTANLTAFLTLSKFTLPYNTVNDILTKNKHFVSMRGG 324
            |||::|.|.|||.:...||.|..|:.|.|||||.||||:.:..:|..:|:|:..:.         
Mouse   608 GSTIAPRALSTRCVSGVWWAFTLIIISSYTANLAAFLTVQRMEVPIESVDDLADQT--------- 663

  Fly   325 GVEYAIRTTNESLSMLNRMIQNNYAVFSDETNDTY-NLQNYV-EKNGYVFVRD-RPAINIMLYRD 386
            .:||.  |.:...||         ..|.:....|| .:.||: .|...|||:. ...|..:|..:
Mouse   664 AIEYG--TIHGGSSM---------TFFQNSRYQTYQRMWNYMYSKQPSVFVKSTEEGIARVLNSN 717

  Fly   387 Y--LYRKTVSFSDEKVHCPFAMAKEPFLKKKRTFAYPIGSNLSQLFDPELLHLVESGIVKHLSKR 449
            |  |...|::....:.:|...........|......|:||.....||..:|.|.|:..::.| ||
Mouse   718 YAFLLESTMNEYYRQRNCNLTQIGGLLDTKGYGIGMPVGSVFRDEFDLAILQLQENNRLEIL-KR 781

  Fly   450 NLPSAEICPQDLGGTERQLRNGDLMMTYYIMLAGFATALAVFSTELMFRYVNSRQEANKWA--RH 512
            .......||::.....:.|...::...:.:::.|.  .:|:|...|.|.:.....||::.:  :.
Mouse   782 KWWEGGKCPKEEDHRAKGLGMENIGGIFVVLICGL--IVAIFMAMLEFLWTLRHSEASEVSVCQE 844

  Fly   513 GIGRTPN----GQSVAPSRWLRGWRRLNSGHGQLLGASTHGQNVTPPPPYQSIFNGGSHGDPLNR 573
            .:....|    ..::.|       ||..||.             .||.|            |:..
Mouse   845 MVTELRNIILCQDNIHP-------RRRRSGG-------------LPPQP------------PVLE 877

  Fly   574 WRRPLANGNA-LGNGVLLG-GDSEGGVRRL 601
            .|||  .|.| |.||.|.| |:.:...:||
Mouse   878 ERRP--RGTATLSNGKLCGAGEPDQLAQRL 905

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Lig_chan-Glu_bd 83..192 CDD:463166 22/112 (20%)
Lig_chan 209..458 CDD:459656 77/267 (29%)
Grik4NP_780690.2 Periplasmic_Binding_Protein_type1 24..402 CDD:471960
PBP2_iGluR_kainate_KA1 415..785 CDD:270442 102/392 (26%)
QRL_CxxC_CxxC 863..927 CDD:469521 19/69 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 931..956
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.