DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and grik1

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_004912220.1 Gene:grik1 / 100493949 XenbaseID:XB-GENE-957124 Length:928 Species:Xenopus tropicalis


Alignment Length:543 Identity:116/543 - (21%)
Similarity:204/543 - (37%) Gaps:140/543 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 ELPMD-VDASEAGFDADAPVETLETINRKKPKLREMLDWIGGKHLRIA-TLEDFPLSYTEVLENG 104
            :..|| :...|.|.:..|.    ||:|......:::..|.....|.:. .|:|...:.|:.|.|.
 Frog   395 DFDMDIISLKEDGMEKAAG----ETVNHLNKVWKKVGVWNSNTGLNMTDNLKDKSTNITDSLANR 455

  Fly   105 TRV------GHGVSFQ---------------IIDFLKKKFN---FTYEVVVPQDNIIGSPSD--- 142
            |.:      ...|.|:               .:|.||:..|   |||||.:..|...|:.:|   
 Frog   456 TLIVTTILEDPYVMFRKSDKPLYGNDRFEGYCLDLLKELSNILGFTYEVRLVVDGKYGAQNDKGE 520

  Fly   143 ---FDRSLIEMVNSSTVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVM------QRPRESASG 198
               ..|.||:    ...|||.|.:       :..|.....:|..:..|.:      ::|..:..|
 Frog   521 WNGMVRELID----HKADLAVAPL-------TITYVREKVIDFSKPFMTLGISILYRKPNGTNPG 574

  Fly   199 -SGLLAPFEFWVWILILVSLLAVGPIIYALIILRNRLT-------------GDGQQTPYSLGHCA 249
             ...|.|....:|:.:|::.|.|..:::.:.    |.|             .|..:..::|.:..
 Frog   575 VFSFLNPLSPDIWMYVLLACLGVSCVLFVIA----RFTPYEWYNPHPCNPDSDVVENNFTLLNSF 635

  Fly   250 WFVYGALMKQGSTLSPIADSTRLLFATWWIFITILTSFYTANLTAFLTLSKFTLPYNTVNDILTK 314
            ||..||||:|||.|.|.|.|||::...||.|..|:.|.|||||.||||:.:...|.::.:|:..:
 Frog   636 WFGVGALMQQGSELMPKALSTRIVGGIWWFFTLIIISSYTANLAAFLTVERMESPIDSADDLAKQ 700

  Fly   315 NK-HFVSMRGGGV--------------EYAIRTTNESLSM-------LNRMIQNNYAVFSDETND 357
            .| .:.::|.|..              .:|..::.:..::       :.|::..:||:..:.|:.
 Frog   701 TKIEYGAVRDGSTMTFFKKSKISTYEKMWAFMSSRQQTALVKNNDEGIQRVLTTDYALLMESTSI 765

  Fly   358 TYNLQ---NYVEKNGYVFVRDRPAINIMLYRDYLYRKTVSFSDEKVHCPFAMAKEPFLKKKRTFA 419
            .|..|   |..:..|.:                         |.|.:               ...
 Frog   766 EYVTQRNCNLTQIGGLI-------------------------DSKGY---------------GVG 790

  Fly   420 YPIGSNLSQLFDPELLHLVESGIVKHLSKRNLPSAEICPQDLGGTERQLRNGDLMMTYYIMLAGF 484
            .||||.........:|.|.|.|.: |:.|........||::.......|...::...:.::.||.
 Frog   791 TPIGSPYRDKITIAILQLQEEGKL-HMMKEKWWRGNGCPEEDSKEASALGVENIGGIFIVLAAGL 854

  Fly   485 ATALAVFSTELMFRYVNSRQEAN 507
            ..::.|...|.:::   ||:.::
 Frog   855 VLSVFVAIGEFIYK---SRKNSD 874

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 93/429 (22%)
grik1XP_004912220.1 Periplasmic_Binding_Protein_Type_1 43..438 CDD:299141 10/46 (22%)
ANF_receptor 61..404 CDD:279440 2/8 (25%)
Periplasmic_Binding_Protein_Type_2 454..823 CDD:304360 93/424 (22%)
Lig_chan 585..854 CDD:278489 67/313 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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