DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and grik4

DIOPT Version :10

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_031761990.1 Gene:grik4 / 100490768 XenbaseID:XB-GENE-1011875 Length:962 Species:Xenopus tropicalis


Alignment Length:506 Identity:121/506 - (23%)
Similarity:195/506 - (38%) Gaps:88/506 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 IDFLKKK---FNFTYEVVVPQDNIIGSPSDFDRSLIEMVN---SSTVDLAAAFIPSLSDQRSFVY 174
            :|.||:.   ..|.|::.:..|.:.|.| :.:.:...||.   |...|||.|.:...:::...:.
 Frog   452 VDMLKELAAILRFNYKIRLVADGVYGVP-ELNGTWTGMVGELISRKADLAVAGLTITAEREKVID 515

  Fly   175 YSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFWVWILILVSLLAVGPIIYALIILRNRLTGDGQ 239
            :|...:..|..|:..............|.||...||:.:|::.|||..:::    |..|||....
 Frog   516 FSKPFMTLGISILYRVHMGRKPGYFSFLDPFSPGVWLFMLLAYLAVSCVLF----LVARLTPYEW 576

  Fly   240 QTP--------------YSLGHCAWFVYGALMKQGSTLSPIADSTRLLFATWWIFITILTSFYTA 290
            .:|              ||||:..||..|..|:||||::|.|.|||.:...||.|..|:.|.|||
 Frog   577 YSPHPCAQGRCNLLVNQYSLGNSLWFPVGGFMQQGSTIAPRALSTRCVSGVWWAFTLIIISSYTA 641

  Fly   291 NLTAFLTLSKFTLPYNTVNDILTKNKHFVSMRGGGVEYAIRTTNESLSMLNRMIQNNYAVFSDET 355
            ||.||||:.:..:|..:|:|:..:..         :||.  |.:...||         ..|.:..
 Frog   642 NLAAFLTVQRMDVPIESVDDLADQTT---------IEYG--TIHGGSSM---------TFFQNSR 686

  Fly   356 NDTY-NLQNYV-EKNGYVFVRD-RPAINIMLYRDY--LYRKTVSFSDEKVHCPFAMAKEPFLKKK 415
            ..|| .:.||: .|...|||:. ...|..:|..:|  |...|::....:.:|...........|.
 Frog   687 YQTYQRMWNYMHSKQPSVFVKSTEEGIARVLNSNYAFLLESTMNEYYRQRNCNLTQVGGLLDTKG 751

  Fly   416 RTFAYPIGSNLSQLFDPELLHLVESGIVKHLSKRNLPSAEICPQDLGGTERQLRNGDLMMTYYIM 480
            .....|:||.....||..:|.|.|:..::.| ||.......||::.....:.|...::...:.::
 Frog   752 YGIGMPVGSAFRDEFDLAILQLQENNCLEDL-KRKWWDGGKCPKEEDHRAKGLGMENIGGIFVVL 815

  Fly   481 LAGFATALAVFSTELMFRYVNSRQEANKWARHGIGRTPN----GQSVAPSRWLRGWRRLNSGHGQ 541
            :.|...|:.:...|.::...|:........:.......:    ..|..|.|     ||       
 Frog   816 ICGLIVAILIAMLEFLWTVRNAEDSEVSVCQEMASELSSIILCKDSFLPRR-----RR------- 868

  Fly   542 LLGASTHGQNVTPPPPYQSIFNGGSHGDPLNRWRRPLANGNALGNGVLLGG 592
                                 .|...|.|:.:..|...|.:.|.||.|.||
 Frog   869 ---------------------GGVIRGRPITQDDRRGRNTSILSNGKLCGG 898

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Lig_chan-Glu_bd 83..192 CDD:463166 18/81 (22%)
Lig_chan 209..458 CDD:459656 77/267 (29%)
grik4XP_031761990.1 Periplasmic_Binding_Protein_type1 23..400 CDD:471960
PBP2_iGluR_kainate_KA1 414..788 CDD:270442 98/361 (27%)
Blue background indicates that the domain is not in the aligned region.

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