DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and grin2b

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_017948700.2 Gene:grin2b / 100490580 XenbaseID:XB-GENE-949327 Length:1449 Species:Xenopus tropicalis


Alignment Length:490 Identity:115/490 - (23%)
Similarity:190/490 - (38%) Gaps:106/490 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 PKLREMLDWIGGKHLRIATLEDFPLSYTEVL--------------------ENGTRVG------- 108
            |...|..|    :||.|.|||:.|....|.:                    ||.|..|       
 Frog   393 PNSEEHKD----EHLSIVTLEEAPFVIVEDVDPLSGTCMRNTVPCRKQIRTENRTEEGGNYIKRC 453

  Fly   109 -HGVSFQIIDFLKKKFNFTYEVVVPQDNIIGSPSDFD-RSLIEMVNSSTVDLAAAFIPSLSDQRS 171
             .|....|:..:.|...|||::.:..:...|...:.. ..:|..|.:....:|...: :::::||
 Frog   454 CKGFCIDILKKIAKTVKFTYDLYLVTNGKHGKKINGTWNGMIGEVVTKRAYMAVGSL-TINEERS 517

  Fly   172 -FVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFWVWILILVSLLAVGPIIYALIILR---- 231
             .|.:|...::.|..:|| .|...:.|.|..|.||...||:::.|.||.|..:  |:.:..    
 Frog   518 EVVDFSVPFIETGISVMV-SRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAV--AVFVFEYFSP 579

  Fly   232 ---NRLTGDGQQ---TPYSLGHCAWFVYGALMKQGSTL-SPIADSTRLLFATWWIFITILTSFYT 289
               ||...||::   ..:::|...|.::|.:......: :|...:::::.:.|..|..|..:.||
 Frog   580 VGYNRCLADGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYT 644

  Fly   290 ANLTAF------------LTLSKFTLPYNTVNDILTKNKHFVSMRGGGVEYAIRTTNESLSMLNR 342
            |||.||            |:..||..|    || .:....|.::..|..|..||  |..|.|.:.
 Frog   645 ANLAAFMIQEEYVDQVSGLSDKKFQRP----ND-FSPAFRFGTVPNGSTERNIR--NNYLEMHSY 702

  Fly   343 MIQNNYAVFSDETNDTYNLQNYVEKNGYV--FVRDRPAINIMLYRDYLYRKTVSFSDEKVHCP-- 403
            |::.|.....|.....        |.|.:  |:.|...:|.|..||. ..|.|:....||...  
 Frog   703 MVKFNQRSVQDALLSL--------KTGKLDAFIYDAAVLNYMAGRDE-GCKLVTIGSGKVFATTG 758

  Fly   404 --FAMAKEPFLKKKRTFAYPIGSNLSQLFD----PELLHLVESGIVKHLSKRNLPSAEICPQDLG 462
              .|:.|:...|::...|      :.|||.    .||..|..:||. |..|..:.|:::...::.
 Frog   759 YGIAIQKDSGWKRQVDLA------ILQLFGDGEMEELEALWLTGIC-HNEKNEVMSSQLDIDNMA 816

  Fly   463 GTERQLRNGDLMMTYYIMLAGFATALAVFSTELMF 497
            |            .:|::.|..|.:|..|..|.:|
 Frog   817 G------------VFYMLAAAMALSLITFIMEHLF 839

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 98/416 (24%)
grin2bXP_017948700.2 PBP1_iGluR_NMDA_NR2 28..383 CDD:380601
PBP2_iGluR_NMDA_Nr2 400..800 CDD:270436 102/430 (24%)
NMDAR2_C 837..1449 CDD:402274 1/3 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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