DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and grin2b

DIOPT Version :10

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:XP_017948700.2 Gene:grin2b / 100490580 XenbaseID:XB-GENE-949327 Length:1449 Species:Xenopus tropicalis


Alignment Length:490 Identity:115/490 - (23%)
Similarity:190/490 - (38%) Gaps:106/490 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 PKLREMLDWIGGKHLRIATLEDFPLSYTEVL--------------------ENGTRVG------- 108
            |...|..|    :||.|.|||:.|....|.:                    ||.|..|       
 Frog   393 PNSEEHKD----EHLSIVTLEEAPFVIVEDVDPLSGTCMRNTVPCRKQIRTENRTEEGGNYIKRC 453

  Fly   109 -HGVSFQIIDFLKKKFNFTYEVVVPQDNIIGSPSDFD-RSLIEMVNSSTVDLAAAFIPSLSDQRS 171
             .|....|:..:.|...|||::.:..:...|...:.. ..:|..|.:....:|...: :::::||
 Frog   454 CKGFCIDILKKIAKTVKFTYDLYLVTNGKHGKKINGTWNGMIGEVVTKRAYMAVGSL-TINEERS 517

  Fly   172 -FVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFWVWILILVSLLAVGPIIYALIILR---- 231
             .|.:|...::.|..:|| .|...:.|.|..|.||...||:::.|.||.|..:  |:.:..    
 Frog   518 EVVDFSVPFIETGISVMV-SRSNGTVSPSAFLEPFSADVWVMMFVMLLIVSAV--AVFVFEYFSP 579

  Fly   232 ---NRLTGDGQQ---TPYSLGHCAWFVYGALMKQGSTL-SPIADSTRLLFATWWIFITILTSFYT 289
               ||...||::   ..:::|...|.::|.:......: :|...:::::.:.|..|..|..:.||
 Frog   580 VGYNRCLADGREPGGPSFTIGKAIWLLWGLVFNNSVPVQNPKGTTSKIMVSVWAFFAVIFLASYT 644

  Fly   290 ANLTAF------------LTLSKFTLPYNTVNDILTKNKHFVSMRGGGVEYAIRTTNESLSMLNR 342
            |||.||            |:..||..|    || .:....|.::..|..|..||  |..|.|.:.
 Frog   645 ANLAAFMIQEEYVDQVSGLSDKKFQRP----ND-FSPAFRFGTVPNGSTERNIR--NNYLEMHSY 702

  Fly   343 MIQNNYAVFSDETNDTYNLQNYVEKNGYV--FVRDRPAINIMLYRDYLYRKTVSFSDEKVHCP-- 403
            |::.|.....|.....        |.|.:  |:.|...:|.|..||. ..|.|:....||...  
 Frog   703 MVKFNQRSVQDALLSL--------KTGKLDAFIYDAAVLNYMAGRDE-GCKLVTIGSGKVFATTG 758

  Fly   404 --FAMAKEPFLKKKRTFAYPIGSNLSQLFD----PELLHLVESGIVKHLSKRNLPSAEICPQDLG 462
              .|:.|:...|::...|      :.|||.    .||..|..:||. |..|..:.|:::...::.
 Frog   759 YGIAIQKDSGWKRQVDLA------ILQLFGDGEMEELEALWLTGIC-HNEKNEVMSSQLDIDNMA 816

  Fly   463 GTERQLRNGDLMMTYYIMLAGFATALAVFSTELMF 497
            |            .:|::.|..|.:|..|..|.:|
 Frog   817 G------------VFYMLAAAMALSLITFIMEHLF 839

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Lig_chan-Glu_bd 83..192 CDD:463166 29/138 (21%)
Lig_chan 209..458 CDD:459656 69/281 (25%)
grin2bXP_017948700.2 PBP1_iGluR_NMDA_NR2 28..383 CDD:380601
PBP2_iGluR_NMDA_Nr2 400..800 CDD:270436 102/430 (24%)
NMDAR2_C 837..1449 CDD:463148 1/3 (33%)
Blue background indicates that the domain is not in the aligned region.

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