DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and grid1

DIOPT Version :10

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001096470.1 Gene:grid1 / 100125089 XenbaseID:XB-GENE-990290 Length:1009 Species:Xenopus tropicalis


Alignment Length:706 Identity:158/706 - (22%)
Similarity:252/706 - (35%) Gaps:204/706 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 VTELPMDVDASEAGFDADAPVETL-----ETINRKKPKLREMLDW------------------IG 81
            :|.|...::..|||.:.....|.|     ||..:   .:|.:..|                  :.
 Frog   375 ITGLTGIMEFKEAGANPHVQFEILGTSYSETFGK---DVRRLATWDSMKGFNGSLQEKPLNNDLQ 436

  Fly    82 GKHLRIATL--EDFPLSYTEVLENGTRVGHGVSFQIIDFLKKKFNFTYEVVVPQDNIIG---SPS 141
            |..|::.|:  |.|.:....:|....|. .|.|.:|:|.|..:..|.||:....|...|   |..
 Frog   437 GLTLKVVTVLEEPFVMVAENILGQPKRY-KGFSIEILDELSNRLGFKYEIYQAPDGKYGHQLSNG 500

  Fly   142 DFDRSLIEMVNSSTVDLAAAFIPSLSDQRSFVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFE 206
            .::..:.|::| ...|:|.:.|....::.:.|.::...||....|:: ::|.|..:...|.|||:
 Frog   501 SWNGMIGELIN-KRADIAISAITITPERENVVDFTKRYLDYSVGILI-KKPEERINIFSLFAPFD 563

  Fly   207 FWVWILILVSLLAVGPIIYALIILRNRL--------TGDGQQTPYSLGHCAWFVYGALMKQGSTL 263
            |.||..|    .||.|::..||.:.||:        :...|.|..:|....|.||||.::||...
 Frog   564 FAVWACI----AAVIPVVGVLIFVLNRIQAVRAQNSSQTSQSTSSTLHSAIWIVYGAFVQQGGES 624

  Fly   264 SPIADSTRLLFATWWIFITILTSFYTANLTAFLTLSKF--------------TLPYNTVND---- 310
            :..:.:.|::..:||:|..|:.|.|||||.||||:|:.              .|||.||.|    
 Frog   625 AANSVAMRIVMGSWWLFTLIVCSSYTANLAAFLTVSRMDNPIRTFQDLAKQVDLPYGTVKDSSVY 689

  Fly   311 ---------ILTKNKHFVSM-----RGGGVEYAIRTTNESLSMLNRMIQNNYAVFSDETNDTYNL 361
                     .|.:::.|..:     :..|.:..:.:.:|.:....|   .|||...|.|...|  
 Frog   690 EYFKSKGTNTLVQDRTFAELWRTIGKNNGSDNCVSSPSEGIRKAKR---GNYAFLWDVTVVEY-- 749

  Fly   362 QNYVEKNGYVFVRDRPAINIMLYRDYLYRKTVSFSDEKVHCPFAMAKEPFLKKKRTFAYPIGSNL 426
                                           .:.:|::  |..|:.......|....|...||..
 Frog   750 -------------------------------AALTDDE--CSVAVTGNTISSKGYGIALQHGSPY 781

  Fly   427 SQLFDPELLHLVESGIVKHLSKRNLPSAEICPQDLGGTERQLRNGDLMM------TYYIMLAGFA 485
            ..:|...:|...:||.:..|.::..|....|  ||........:|..:.      .:.|:..|..
 Frog   782 RDIFSQRILEFQDSGRLDVLKEKWWPRTGRC--DLNSHNNAQNDGKALKLHSFAGVFCILAIGLL 844

  Fly   486 TALAVFSTELMFRYVNSRQEANKWARHGIGRTPNGQSVAPSRWLRGWRRLNS------GHGQLLG 544
            .|..|.:.||.:.....||::.|     ..:..|.:.|        .|||||      .|.|:..
 Frog   845 LACLVAALELWWNSNRCRQDSPK-----EDKEVNLEQV--------HRRLNSLIDEDMAHKQIST 896

  Fly   545 ASTH----------GQNVTPPPPYQSI-------------FNGG-------SHGDPLNRWRRPLA 579
            ||..          .|.:.|...|||.             .:||       |...||     ||:
 Frog   897 ASIEISALEIGGMPSQTLEPLREYQSTQLSVTTFLPEQTGHSGGRTLTSIPSSNLPL-----PLS 956

  Fly   580 NGNALGNGVLLGGDSEGGVRRLINGRDYMVFRNPNG----QSQLVPVRSPSAALFQ 631
            :...:.:                   .....|:|||    ||   ||::|....||
 Frog   957 SSATMPS-------------------MQCKHRSPNGGLFRQS---PVKTPMPLSFQ 990

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Lig_chan-Glu_bd 83..192 CDD:463166 26/113 (23%)
Lig_chan 209..458 CDD:459656 66/288 (23%)
grid1NP_001096470.1 PBP1_iGluR_delta_1 25..426 CDD:380615 11/53 (21%)
PBP2_iGluR_delta_1 437..807 CDD:270448 99/414 (24%)

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