DRSC/TRiP Functional Genomics Resources

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Protein Alignment Ir76b and grin2ca

DIOPT Version :9

Sequence 1:NP_649176.1 Gene:Ir76b / 40198 FlyBaseID:FBgn0036937 Length:636 Species:Drosophila melanogaster
Sequence 2:NP_001352716.1 Gene:grin2ca / 100003342 ZFINID:ZDB-GENE-070822-3 Length:1400 Species:Danio rerio


Alignment Length:572 Identity:118/572 - (20%)
Similarity:219/572 - (38%) Gaps:130/572 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 IQMGENGTLSPVTELPMDVDASEAGFDADA----PVETLETINRKK------------------- 70
            |:...||||.. ..|.:..:.::..|::|.    |...:.|::|.:                   
Zfish   332 IRPASNGTLYR-HMLNVSWENTDFSFNSDGYLVNPSMIIITLDRGRQWDKVGNYESGILQMRYPV 395

  Fly    71 -PKLREMLDWIG-GKHLRIATLEDFPLSYTEVLE-------------------NGTRVGH----- 109
             |:....|:.:. .:||.:||||:.|....|.::                   ..|.|||     
Zfish   396 WPRYGTFLEPVSDNRHLTVATLEERPFVIVEAVDPVTGTCLSNTVPCRRQSNKTETIVGHTEPYT 460

  Fly   110 -----GVSFQIIDFLKKKFNFTYEVVVPQDNIIGSPSDFDR----SLIEMVNSSTVDLAAAFIPS 165
                 |....|:..|.:...|:|::.:..:   |......|    .:|..|.....|:|...: :
Zfish   461 KLCCKGFCIDILKKLSRNIKFSYDLYLVTN---GKHGKLVRGIWNGMIGEVFYKRADMAIGSL-T 521

  Fly   166 LSDQRS-FVYYSTTTLDEGEWIMVMQRPRESASGSGLLAPFEFWVWILILVSLLAV--------- 220
            ::::|| .:.:|...::.|..:|| .|...:.|.|..|.|:...||:::.|..|.|         
Zfish   522 INEERSEIIDFSVPFVETGISVMV-ARSNGTVSPSAFLEPYSPAVWVMMFVMCLTVVAVTVFVFE 585

  Fly   221 --GPIIYALIILRNRLTGDGQQTPYSLGHCAWFVYGALMKQGSTL-SPIADSTRLLFATWWIFIT 282
              .|:.|...::..:   |.....:::|...|.::|.:......: :|...:::::...|..|..
Zfish   586 YCSPVGYNRSLVSAK---DPGGPTFTIGKSVWLLWGIVFNNSVPIENPKGTTSKIMVLVWAFFAV 647

  Fly   283 ILTSFYTANLTAFLTLSKFTLPYNTVNDILTKN----------KHFVSMRGGGVEYAIRTTNESL 337
            |..:.|||||.||:...::   .:||:.:..|.          ..|.::..|..|..||:...  
Zfish   648 IFLASYTANLAAFMIQEQY---IDTVSGLSDKKFQKPQDQYPPFRFGTVPNGSTERNIRSNYP-- 707

  Fly   338 SMLNRMIQNNYAVFSDETNDTYNLQNYVEKNGYV--FVRDRPAINIMLYRDYLYRKTVSFSDEKV 400
            .|.:.|::.|.....|..|..        |.|.:  |:.|...:|.|..:|. ..|.|:....||
Zfish   708 EMHSHMVKYNQKGVEDALNSL--------KTGKLDAFIYDAAVLNYMAGKDE-GCKLVTIGSGKV 763

  Fly   401 HCP--FAMAKEPFLKKKRTFAYPIGSNLSQLF---DPELLHLV-ESGIVKHLSKRNLPSAEICPQ 459
            ...  :.:|    |:|:..:..||...|.|..   |.:.|..| .:||.:: .|:.:.|:::...
Zfish   764 FATTGYGIA----LQKESRWKRPIDLALLQFLADGDTQKLQTVWLTGICRN-EKKEVMSSKLDID 823

  Fly   460 DLGGTERQLRNGDLMMTYYIMLAGFATALAVFSTELMFRYVNSRQEANKWAR 511
            ::.|            .:|::|.....:|.||:.|.:. |...|....|..|
Zfish   824 NMAG------------VFYMLLVAMGLSLLVFAWEHLL-YWKLRHSVRKSER 862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Ir76bNP_649176.1 Periplasmic_Binding_Protein_Type_2 83..437 CDD:304360 89/416 (21%)
grin2caNP_001352716.1 PBP1_iGluR_NMDA_NR2 38..398 CDD:107373 11/66 (17%)
PBP2_iGluR_NMDA_Nr2 409..810 CDD:270436 92/426 (22%)
NMDAR2_C 847..>938 CDD:313729 4/17 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591382
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1052
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.830

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