DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG14185 and SNRPA1

DIOPT Version :10

Sequence 1:NP_649175.1 Gene:CG14185 / 40197 FlyBaseID:FBgn0036936 Length:402 Species:Drosophila melanogaster
Sequence 2:NP_003081.2 Gene:SNRPA1 / 6627 HGNCID:11152 Length:255 Species:Homo sapiens


Alignment Length:260 Identity:60/260 - (23%)
Similarity:93/260 - (35%) Gaps:58/260 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 EAVEQVRLRVISYTVSLSRLSLFLPRLQSLDLSGSVLSSLRDLGYGLLQLTRLDISNCGLNSFDG 184
            |.:||    ...||.::        |.:.|||.|..:..:.:||..|.|...:|.|:..:...||
Human     7 ELIEQ----AAQYTNAV--------RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG 59

  Fly   185 TSGLPAIRVLIADGNMIQRVDP--------LAELVHLRVLKARNNRISELGLLSFLGMCPQLQEV 241
            ...|..::.|:.:.|.|.|:..        |.||:      ..||.:.|||.|..|.....|..:
Human    60 FPLLRRLKTLLVNNNRICRIGEGLDQALPCLTELI------LTNNSLVELGDLDPLASLKSLTYL 118

  Fly   242 ELQGNPVCRLPLYRSLLARSVPTLQLLD------------GRVLNGEPAPVEMEEATSPASSDLE 294
            .:..|||.....||..:...||.:::||            .::..|:.. .::.:..:..|....
Human   119 SILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKERQEAEKMFKGKRG-AQLAKDIARRSKTFN 182

  Fly   295 SGSETTAQRPNTAPAPEPVPIALNAAIRRQVSA---------SSGSTPVAGSVLSLVRQRRRRSG 350
            .|:.....:....|:|..|....||.......|         .||..|          .|.||||
Human   183 PGAGLPTDKKKGGPSPGDVEAIKNAIANASTLAEVERLKGLLQSGQIP----------GRERRSG 237

  Fly   351  350
            Human   238  237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14185NP_649175.1 leucine-rich repeat 146..168 CDD:275380 7/21 (33%)
PPP1R42 <169..271 CDD:455733 29/121 (24%)
leucine-rich repeat 169..190 CDD:275380 5/20 (25%)
leucine-rich repeat 191..212 CDD:275380 7/28 (25%)
leucine-rich repeat 213..237 CDD:275380 7/23 (30%)
SNRPA1NP_003081.2 LRR_9 1..175 CDD:405295 44/186 (24%)
LRR 1 20..41 7/20 (35%)
leucine-rich repeat 22..43 CDD:275378 7/20 (35%)
LRR 2 43..64 5/20 (25%)
leucine-rich repeat 44..65 CDD:275378 5/20 (25%)
LRR 3 65..86 4/20 (20%)
leucine-rich repeat 66..89 CDD:275378 4/22 (18%)
LRR 4 89..110 9/26 (35%)
leucine-rich repeat 90..114 CDD:275378 10/29 (34%)
leucine-rich repeat 115..127 CDD:275378 4/11 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 174..201 4/26 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 222..255 8/26 (31%)

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