DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG14185 and Lrrc56

DIOPT Version :10

Sequence 1:NP_649175.1 Gene:CG14185 / 40197 FlyBaseID:FBgn0036936 Length:402 Species:Drosophila melanogaster
Sequence 2:NP_001020073.1 Gene:Lrrc56 / 365389 RGDID:1311654 Length:548 Species:Rattus norvegicus


Alignment Length:320 Identity:88/320 - (27%)
Similarity:129/320 - (40%) Gaps:62/320 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 PGPAALAQVRMPPPEVRLNQQNPAQQQQQRMQFNRRQLGRRNSFDRDVAIAEEEQHLPAFVHLLP 94
            ||.|:: :||    |:.....|..|.|.:|       ||......|:..:.|         ||.|
  Rat    13 PGTASI-RVR----ELSWQGLNNPQPQNKR-------LGSHGDIYRERRVEE---------HLSP 56

  Fly    95 VVLPQQGPEPTLDELLRRVTQRTDLEAVEQVRLRVISYTVSLSRLSLFLPRLQSLDLSGSVLSSL 159
            .             .|:.:.|..||:.|..:.:.|.:...||....:.||.|..|.|:.|.|.||
  Rat    57 A-------------RLQALAQVDDLQLVRVLEMCVDTRKNSLGNFGMHLPNLIQLKLNHSCLGSL 108

  Fly   160 RDLGYGLLQLTRLDISNCGLNSFDGTSGLPAIRVLIADGNMIQRVDPLAELVHLRVLKARNNRIS 224
            ||||..|.||..|.::.|||...||.....|::.|....|.|..:.||..|..|.||....|.:.
  Rat   109 RDLGTSLGQLQVLWLARCGLTDLDGIGSFLALKELYVSYNNISDLSPLCLLEQLEVLDLEGNNVE 173

  Fly   225 ELGLLSFLGMCPQLQEVELQGNPVCRLP------------LYRSLLARSVPTLQLLD--GRVLNG 275
            :||.:.:|.:||:|..:.|:||.||..|            .||:.:.:.:|.|.:||  ......
  Rat   174 DLGQMRYLQLCPRLTTLTLEGNLVCLKPDPGPSNKAPQDYNYRAEVKKLIPQLHILDEVPTTCTN 238

  Fly   276 EPAPVEMEEATSPASSDLESGSETTAQRPN--------------TAPAPEPVPIALNAAI 321
            .|||.::.:........::.|:......|.              |.|.||..|.||:..:
  Rat   239 LPAPQKLSQDWLMVKEAIKEGNVLDILLPRLECSHGATIRKFDPTLPVPETQPWALSLLV 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14185NP_649175.1 leucine-rich repeat 146..168 CDD:275380 12/21 (57%)
PPP1R42 <169..271 CDD:455733 36/115 (31%)
leucine-rich repeat 169..190 CDD:275380 7/20 (35%)
leucine-rich repeat 191..212 CDD:275380 6/20 (30%)
leucine-rich repeat 213..237 CDD:275380 8/23 (35%)
Lrrc56NP_001020073.1 LRR <92..292 CDD:443914 60/199 (30%)
LRR 1 94..115 11/20 (55%)
leucine-rich repeat 95..117 CDD:275380 12/21 (57%)
LRR 2 117..138 8/20 (40%)
leucine-rich repeat 118..139 CDD:275380 7/20 (35%)
LRR 3 139..160 6/20 (30%)
leucine-rich repeat 140..161 CDD:275380 6/20 (30%)
LRR 4 161..182 6/20 (30%)
leucine-rich repeat 162..186 CDD:275380 8/23 (35%)
LRR 5 186..206 7/19 (37%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 405..433
Blue background indicates that the domain is not in the aligned region.

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