DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sNPF-R and C3ar1

DIOPT Version :9

Sequence 1:NP_001262086.1 Gene:sNPF-R / 40195 FlyBaseID:FBgn0036934 Length:600 Species:Drosophila melanogaster
Sequence 2:NP_114449.2 Gene:C3ar1 / 84007 RGDID:620537 Length:472 Species:Rattus norvegicus


Alignment Length:459 Identity:100/459 - (21%)
Similarity:182/459 - (39%) Gaps:129/459 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 VLYATVFVLGVFGNVLVCYVVLRNRAMQTVTNIFITNLALSDILLCVLAVPFTPLYTFM-GRWAF 131
            |:.:...:||:.||.||.:|. ..:..:||..::..:|.|:| .||.|::||:..:..: |.|.:
  Rat    28 VILSLTCLLGLPGNGLVLWVA-GVKMKRTVNTVWFLHLTLAD-FLCCLSLPFSVAHLILRGHWPY 90

  Fly   132 GRSLCHLVSFAQGCSIYISTLTLTSIAIDRYFVIIYPF--HPRMKLSTCIGIIVSIWVIALLATV 194
            |..||.|:......:::.|...||:|::||..::..|.  .....:.|...:...:||:|.:..:
  Rat    91 GLFLCKLIPSVIILNMFASVFLLTAISLDRCLMVHKPIWCQNHRSVRTAFAVCGCVWVVAFVMCI 155

  Fly   195 P--------------------------------YGMYMKMTNELVNGTQTGNE----TLVEATLM 223
            |                                |..::...|...|.|...::    :.|.|..:
  Rat   156 PVFVYRDLLVVDDYSVCGYNFDSSRAYDYWDYMYNSHLPEINPPDNSTGHVDDRTAPSSVPARDL 220

  Fly   224 LNGSFVAQGSGFIEAPD-------------------------------------STSATQAYMQV 251
            ...:...|...|..:|:                                     :|..|.|::..
  Rat   221 WTATTALQSQTFHTSPEDPFSQDSASQQPHYGGKPPTVLIATIPGGFPVEDHKSNTLNTGAFLSA 285

  Fly   252 MTAGS-TGPEMPYVRVYCEENWPSEQY-RKVFG--------AITTT---LQFVLPFFIISICYVW 303
            .|..| |....|   :|..: :|.:.: :.::|        |||.:   :.|::||||:..||..
  Rat   286 HTEPSLTASSSP---LYAHD-FPDDYFDQLMYGNHAWTPQVAITISRLVVGFLVPFFIMITCYSL 346

  Fly   304 ISVKLNQRARAKPGSKSSRREEADRDRKKRTNRMLIAMVAVFGLSWLPINVVNIFDDFDDKSNEW 368
            |..::             |:....:.|.| |.|:.:|:|.||.:.|:|.::|.|.....|:.:..
  Rat   347 IVFRM-------------RKTNLTKSRNK-TLRVAVAVVTVFFVCWIPYHIVGILLVITDQESAL 397

  Fly   369 RFYIL-FFFVAHSIAMSSTCYNPFLYAWLNENFRK----------------EFKHVLPCFN---P 413
            |..:| :..::.::|.:::|:||||||.|.::|||                |..|...|..   |
  Rat   398 REVVLPWDHMSIALASANSCFNPFLYALLGKDFRKKARQSVKGILEAAFSEELTHSTSCTQDKAP 462

  Fly   414 SNNN 417
            |..|
  Rat   463 SKRN 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sNPF-RNP_001262086.1 7tm_4 75..>196 CDD:304433 35/155 (23%)
7tm_1 80..393 CDD:278431 84/402 (21%)
C3ar1NP_114449.2 7tm_GPCRs 24..434 CDD:421689 94/425 (22%)
TM helix 1 25..51 CDD:410628 8/23 (35%)
TM helix 2 57..82 CDD:410628 8/25 (32%)
TM helix 3 95..125 CDD:410628 8/29 (28%)
TM helix 4 137..157 CDD:410628 4/19 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 232..251 2/18 (11%)
TM helix 5 321..346 CDD:410628 10/24 (42%)
TM helix 6 358..388 CDD:410628 12/30 (40%)
TM helix 7 402..427 CDD:410628 9/24 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.