DRSC/TRiP Functional Genomics Resources

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Protein Alignment sNPF-R and Lkr

DIOPT Version :9

Sequence 1:NP_001262086.1 Gene:sNPF-R / 40195 FlyBaseID:FBgn0036934 Length:600 Species:Drosophila melanogaster
Sequence 2:NP_647968.3 Gene:Lkr / 38622 FlyBaseID:FBgn0035610 Length:542 Species:Drosophila melanogaster


Alignment Length:563 Identity:142/563 - (25%)
Similarity:225/563 - (39%) Gaps:149/563 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 VLYATVFVLGVFGNVLVCYVVLRNRAMQTVTNIFITNLALSDILLCVLAVPFTPLYTFMGRWAFG 132
            :.|..:.::.|.||.||.:||...|.|:||||::|.|||.:|:::.:..:||......:..|...
  Fly    40 IFYGGISIVAVIGNTLVIWVVATTRQMRTVTNMYIANLAFADVIIGLFCIPFQFQAALLQSWNLP 104

  Fly   133 RSLCHLVSFAQGCSIYISTLTLTSIAIDRYFVIIYPFHPRMKLSTCIGIIVSIWVIALLATVPYG 197
            ..:|....|.|..|:.:|..|||:|||||:..||.|...|........||..||::|||..||:.
  Fly   105 WFMCSFCPFVQALSVNVSVFTLTAIAIDRHRAIINPLRARPTKFVSKFIIGGIWMLALLFAVPFA 169

  Fly   198 MYMKMTNELVNGTQTGNETLVEATLMLNGSFVAQGSGFIEAPDSTSATQAYMQVMTAGSTGPEMP 262
            :..:: .||....:..|||                                            ..
  Fly   170 IAFRV-EELTERFRENNET--------------------------------------------YN 189

  Fly   263 YVRVYC------EENWPSEQYRKVFGAITTTLQFVLPFFIISICYVWISVKL-NQRARAKPGSKS 320
            ..|.:|      ::...|.:|..||      :|:::||.:||..|:.::|:| ..||   ||:..
  Fly   190 VTRPFCMNKNLSDDQLQSFRYTLVF------VQYLVPFCVISFVYIQMAVRLWGTRA---PGNAQ 245

  Fly   321 SRREEADRDRKKRTNRMLIAMVAVFGLSWLPINVVNIFDDFDDKSNEWRFYILFFFVAHSIAMSS 385
            ..|:......||:..:|||.:|.:|||.|||:.:.||......:.|::.|..:.:|....:|||:
  Fly   246 DSRDITLLKNKKKVIKMLIIVVIIFGLCWLPLQLYNILYVTIPEINDYHFISIVWFCCDWLAMSN 310

  Fly   386 TCYNPFLYAWLNENFRKEF-KHVLPCFNPSNNNIINITRGYN--------RSDRNTCGPRLH--- 438
            :|||||:|...||.|::|| |....||.....::....|.::        ||.......|:.   
  Fly   311 SCYNPFIYGIYNEKFKREFNKRFAACFCKFKTSMDAHERTFSMHTRASSIRSTYANSSMRIRSNL 375

  Fly   439 HGKGDGGMGGGSLDADDQDENGITQETCLPKEKLLIIPREPTYGNGTGAVSPILSGRGINAALVH 503
            .|...||:..|.                                  .|...|.:.|.|.|:.:.:
  Fly   376 FGPARGGVNNGK----------------------------------PGLHMPRVHGSGANSGIYN 406

  Fly   504 GGDHQMHQLQPSHHQQVELTRRIRRRTDETDGDYLDSGDEQTVEVRFSETPFVSTDNTTGISI-- 566
            |...|.:.:...|||                        .|:| |.|:.||.||... .|:::  
  Fly   407 GSSGQNNNVNGQHHQ------------------------HQSV-VTFAATPGVSAPG-VGVAMPP 445

  Fly   567 --------LETSTSHCQDSDVMVEL------GEAIGAGGGAEL 595
                    |..:...|:|...::||      .|.:.:|.|.:|
  Fly   446 WRRNNFKPLHPNVIECEDDVALMELPSTTPPSEELASGAGVQL 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sNPF-RNP_001262086.1 7tm_4 75..>196 CDD:304433 46/120 (38%)
7tm_1 80..393 CDD:278431 95/319 (30%)
LkrNP_647968.3 7tm_4 46..329 CDD:304433 100/336 (30%)
7tm_1 52..318 CDD:278431 95/319 (30%)
PHA03216 467..>519 CDD:177558 6/22 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45459150
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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