DRSC/TRiP Functional Genomics Resources

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Protein Alignment sNPF-R and npr-12

DIOPT Version :9

Sequence 1:NP_001262086.1 Gene:sNPF-R / 40195 FlyBaseID:FBgn0036934 Length:600 Species:Drosophila melanogaster
Sequence 2:NP_001293732.1 Gene:npr-12 / 188742 WormBaseID:WBGene00020689 Length:397 Species:Caenorhabditis elegans


Alignment Length:352 Identity:85/352 - (24%)
Similarity:162/352 - (46%) Gaps:53/352 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 LYATVFVLGVFGNVLVCYVVLRNRAMQTVTNIFITNLALSDILLCVLAVPFTPLYTFMGR-WAFG 132
            :|..|...|...|.:|....:|...::.:.|.||.|||.||::|||:..|.| |||.:.. |.||
 Worm    47 MYGLVCSFGALANFIVLLAFVRTANLRNLRNSFIVNLAFSDLILCVVTAPVT-LYTSLNLFWPFG 110

  Fly   133 RSLCHLVSFAQGCSIYISTLTLTSIAIDRYFVIIYPFHPRMKLST---CIGIIVSIWVIALLATV 194
            ...|..::..|..:.::|:|||..||:||..:.:.|...|:..:.   |.|:   :|:|:::..:
 Worm   111 DWSCKFLAGVQAVNTFVSSLTLAFIAMDRVLLTLCPVRWRLAATAPLLCYGV---VWIISIIVAL 172

  Fly   195 PYGMYMKMTNELVNGTQTGNETLVEATLMLNGSFVAQGSGFIEAPDSTSATQAYMQVMTAGSTGP 259
            ||.:                  .|.:.|               ||....:.:|..:::|  ....
 Worm   173 PYAL------------------AVSSKL---------------APFDPWSDRATPKMLT--YCNR 202

  Fly   260 EMPYVRVYCEENWPSEQYRK-VFGAITTTLQFVLPFFIISICYVWISVKLNQRARAKPGSKSSRR 323
            ::|.:....:|.|.:....| .:..:...:|::||...::..|..|...:.:|::......::||
 Worm   203 QVPEICAEMQEAWDNAIVSKTTYTFVVLGIQYILPLAALAYAYFQIGSTIQKRSKVSRTVDTTRR 267

  Fly   324 EEADRDRKKRTNRMLIAMVAVFGLSWLPINVVNIFDDFDDKSNEWRFYILFFFVAHSIAMSSTCY 388
            .:. ::|.:|...:|..:|..:.:.|.|:|:.::.:..:..:.....||.    .|.:.:||||.
 Worm   268 MQM-QNRNRRALLLLFLLVLTYAVCWAPMNIYHVLNGLEIINYSQNMYIF----CHLVGISSTCV 327

  Fly   389 NPFLYAWLNENFRKEFKHVL----PCF 411
            ||.:||.:||:||...:.::    ||:
 Worm   328 NPIVYALVNESFRNALQSMILQFRPCY 354

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sNPF-RNP_001262086.1 7tm_4 75..>196 CDD:304433 39/124 (31%)
7tm_1 80..393 CDD:278431 74/317 (23%)
npr-12NP_001293732.1 7tmA_NPYR-like 42..343 CDD:320331 83/339 (24%)
TM helix 1 44..68 CDD:320331 5/20 (25%)
TM helix 2 77..99 CDD:320331 13/22 (59%)
TM helix 3 115..137 CDD:320331 6/21 (29%)
TM helix 4 158..174 CDD:320331 4/18 (22%)
TM helix 5 223..246 CDD:320331 3/22 (14%)
TM helix 6 275..300 CDD:320331 6/24 (25%)
TM helix 7 311..336 CDD:320331 11/28 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1072979at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X589
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

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