DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sNPF-R and CHRM4

DIOPT Version :9

Sequence 1:NP_001262086.1 Gene:sNPF-R / 40195 FlyBaseID:FBgn0036934 Length:600 Species:Drosophila melanogaster
Sequence 2:NP_000732.2 Gene:CHRM4 / 1132 HGNCID:1953 Length:479 Species:Homo sapiens


Alignment Length:475 Identity:95/475 - (20%)
Similarity:172/475 - (36%) Gaps:150/475 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 HNQF---VQIFFYVLYATVFVLGVFGNVLVCYVVLRNRAMQTVTNIFITNLALSDILLCVLAVPF 119
            ||::   ..:|...:..::.::.|.||:||...:..||.:|||.|.|:.:||.:|:::...::..
Human    24 HNRYETVEMVFIATVTGSLSLVTVVGNILVMLSIKVNRQLQTVNNYFLFSLACADLIIGAFSMNL 88

  Fly   120 TPLYTFMGRWAFGRSLC-------HLVSFAQGCSIYISTLTLTSIAIDRYFVIIYPF-HPRMKLS 176
            ..:|...|.|..|..:|       ::||.|       |.:.|..|:.||||.:..|. :|..:.:
Human    89 YTVYIIKGYWPLGAVVCDLWLALDYVVSNA-------SVMNLLIISFDRYFCVTKPLTYPARRTT 146

  Fly   177 TCIGI-IVSIWVIALLATVPYGMYMKMTNELVNGTQT--GNETLVE------------------- 219
            ...|: |.:.||::.:...|..::.    :.|.|.:|  .|:..::                   
Human   147 KMAGLMIAAAWVLSFVLWAPAILFW----QFVVGKRTVPDNQCFIQFLSNPAVTFGTAIAAFYLP 207

  Fly   220 ----ATLMLNGSFV-----------------AQGSGFIEAP------------------------ 239
                ..|.::.|..                 |:...|:::|                        
Human   208 VVIMTVLYIHISLASRSRVHKHRPEGPKEKKAKTLAFLKSPLMKQSVKKPPPGEAAREELRNGKL 272

  Fly   240 ------------------------DSTSATQ-----AYMQVMTAGSTGPEMPYVRVYCEENWPSE 275
                                    .|.||||     ...::.|..:|.|.||...:......|:.
Human   273 EEAPPPALPPPPRPVADKDTSNESSSGSATQNTKERPATELSTTEATTPAMPAPPLQPRALNPAS 337

  Fly   276 QYRKV------FGAITTTLQFVLPFF------IISICYVWISVKLNQRARAKPGSKSSRREEADR 328
            ::.|:      .|....|...::|..      ..::...:.|:..||..:        :|:.|.|
Human   338 RWSKIQIVTKQTGNECVTAIEIVPATPAGMRPAANVARKFASIARNQVRK--------KRQMAAR 394

  Fly   329 DRKKRTNRMLIAMVAVFGLSWLPINV---VNIFDDFDDKSNEWRFYILFFFVAHSIAMSSTCYNP 390
            :||  ..|.:.|::..|.|:|.|.||   ||.|.........|.       :.:.:...::..||
Human   395 ERK--VTRTIFAILLAFILTWTPYNVMVLVNTFCQSCIPDTVWS-------IGYWLCYVNSTINP 450

  Fly   391 FLYAWLNENFRKEFKHVLPC 410
            ..||..|..|:|.|:|:|.|
Human   451 ACYALCNATFKKTFRHLLLC 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sNPF-RNP_001262086.1 7tm_4 75..>196 CDD:304433 36/129 (28%)
7tm_1 80..393 CDD:278431 82/431 (19%)
CHRM4NP_000732.2 7tmA_mAChR_M4 33..464 CDD:341344 89/458 (19%)
TM helix 1 35..59 CDD:341344 5/23 (22%)
TM helix 2 68..90 CDD:341344 5/21 (24%)
TM helix 3 106..128 CDD:341344 6/28 (21%)
TM helix 4 151..167 CDD:341344 3/15 (20%)
TM helix 5 193..216 CDD:341344 1/22 (5%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 271..333 10/61 (16%)
TM helix 6 399..421 CDD:341344 8/21 (38%)
TM helix 7 432..457 CDD:341344 5/31 (16%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.