DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sNPF-R and XB994602

DIOPT Version :9

Sequence 1:NP_001262086.1 Gene:sNPF-R / 40195 FlyBaseID:FBgn0036934 Length:600 Species:Drosophila melanogaster
Sequence 2:XP_002940541.3 Gene:XB994602 / 100497124 XenbaseID:XB-GENE-994603 Length:364 Species:Xenopus tropicalis


Alignment Length:382 Identity:109/382 - (28%)
Similarity:173/382 - (45%) Gaps:85/382 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 FYVLYATVFVLGVFGNVLVCYVVLRNRAMQTVTNIFITNLALSDILLCVLAVPFTPLYTFMGR-W 129
            |..:||.:..:...||..:..::...:.:...||..|.||||:|:::|:..||.|..|.|..| |
 Frog    34 FIPIYALLVTVACLGNCALILLIALTKKLHNTTNFLIGNLALADLVMCIFCVPLTASYAFENRGW 98

  Fly   130 AFGRSLCHLVSFAQGCSIYISTLTLTSIAIDRYFVIIYPFHPRMKLSTCIGIIVSIWVIALLATV 194
            .||..:||.|:..|..::.:|.|:||:||:|||.|::||...|:...:||.|:..:|::::..::
 Frog    99 LFGEFMCHFVTLMQAATVCVSVLSLTAIAVDRYVVVVYPIRRRIGCRSCIYIVSLVWLVSIGISM 163

  Fly   195 PYGMYMKMTNELVNGTQTGNETLVEATLMLNGSFVAQGSGFIEAPDSTSATQAYMQVMTAGSTGP 259
            |                                              |.....|:.:.:||    
 Frog   164 P----------------------------------------------TFFHTHYLDLKSAG---- 178

  Fly   260 EMPYVRVYCEENWPS-EQYRKVFGAITTTLQFVLPFFIISICYVWISVKLNQRARAKPGSKSSRR 323
               :..:.|||.|.: |:.|.::......|.::||...|:|.|..|:..|  |.|..||:.|..:
 Frog   179 ---HDMIICEEFWRNQEKQRLLYSCSLLLLYYMLPLSAITISYCAIAYHL--RKRNVPGATSHNQ 238

  Fly   324 EEADRDRKKRTNRMLIAMVAVFGLSWLPINVVNIFDDFDDKSNEWRFYIL-------FFFVAHSI 381
            ::..: :|::|.|||...|..||:.|||:.::|:..|.|::     |.||       .....|.|
 Frog   239 DKWSK-KKQKTFRMLSISVMAFGICWLPLQILNLIRDIDEE-----FAILDKNYINVIQVTCHLI 297

  Fly   382 AMSSTCYNPFLYAWLNENFRKE-----FKHVLPCFNPSNNNIINITRGYNRSDRNTC 433
            ||||.|||||:||.|::.||..     |.|.......|..|          |..|||
 Frog   298 AMSSACYNPFIYASLHDKFRFHLRNYFFHHKRRANTMSTKN----------SRHNTC 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sNPF-RNP_001262086.1 7tm_4 75..>196 CDD:304433 41/121 (34%)
7tm_1 80..393 CDD:278431 93/321 (29%)
XB994602XP_002940541.3 7tm_GPCRs 32..320 CDD:421689 101/346 (29%)
TM helix 1 33..59 CDD:410628 5/24 (21%)
TM helix 2 66..91 CDD:410628 12/24 (50%)
TM helix 3 105..135 CDD:410628 14/29 (48%)
TM helix 4 146..167 CDD:410628 6/66 (9%)
TM helix 5 195..224 CDD:410628 8/28 (29%)
TM helix 6 243..273 CDD:410628 12/30 (40%)
TM helix 7 288..313 CDD:410628 13/24 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 226 1.000 Inparanoid score I3406
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1072979at2759
OrthoFinder 1 1.000 - - FOG0004089
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X589
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.970

Return to query results.
Submit another query.