DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sNPF-R and XB982628

DIOPT Version :9

Sequence 1:NP_001262086.1 Gene:sNPF-R / 40195 FlyBaseID:FBgn0036934 Length:600 Species:Drosophila melanogaster
Sequence 2:XP_002933014.2 Gene:XB982628 / 100493271 XenbaseID:XB-GENE-982629 Length:387 Species:Xenopus tropicalis


Alignment Length:400 Identity:123/400 - (30%)
Similarity:188/400 - (47%) Gaps:70/400 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 STTNWSLTSPGTTSAILADVAASDEDRSGGIIHNQFVQIF---FYVLYATVFVLGVFGNVLVCYV 87
            :|..||......|   :..|..:..:.|......|.:|.:   |...|..|.::|:|||.|:.||
 Frog    41 TTIGWSYEPENLT---IYMVNKNGSNASAPFTGVQLIQSYKPLFIPCYTLVVLIGIFGNYLLLYV 102

  Fly    88 VLRNRAMQTVTNIFITNLALSDILLCVLAVPFTPLYTFMGR-WAFGRSLCHLVSFAQGCSIYIST 151
            :.|.|.|..|||.||.|||.||:|:|...||||..|.|..: |.||:.:|:.|...|..::|:|.
 Frog   103 ICRTRKMHNVTNFFIGNLAFSDMLMCATCVPFTLAYAFNPQGWVFGKFMCYFVFLMQPVTVYVSV 167

  Fly   152 LTLTSIAIDRYFVIIYPFHPRMKLSTCIGIIVSIWVIALLATVPYGMYMKMTNELVNGTQTGNET 216
            .|||:||:|||:..::|...|:.::|||.:::.||:::.....|                     
 Frog   168 FTLTAIAVDRYYATVHPLKKRISVTTCIYVLMGIWLLSCALVGP--------------------- 211

  Fly   217 LVEATLMLNGSFVAQGSGFIEAPDSTSATQAYMQVMTAGSTGPEMPYVRVYCEENW-PSEQYRKV 280
                                     ..|...:::....|.|         .|||.| ..|..|..
 Frog   212 -------------------------AIAHTYHVEFQQEGFT---------ICEEFWMGKETERLA 242

  Fly   281 FGAITTTLQFVLPFFIISICYVWISVKLNQRARAKPGSKSSRREEADRDRKKRTNRMLIAMVAVF 345
            :...|..:.::||...:|:.|:.|:|||  :.|..||..:..:.|.||.||::..|:::.:|..|
 Frog   243 YAYSTLIITYILPLSAVSLSYICITVKL--KNRVVPGHPTQSQAEFDRLRKRKIFRLIVLVVTAF 305

  Fly   346 GLSWLPINVVNIFDDFDDKSNEWRFYILFFFVAHSIAMSSTCYNPFLYAWLNENFRKEFKHVLPC 410
            |:.||||:|.||..|.|.......:::......|..||||:|.||||||||::.||.|.:.:. .
 Frog   306 GICWLPIHVFNIIRDIDINLINKHYFLHIQLFCHWFAMSSSCCNPFLYAWLHDRFRSELRKMF-T 369

  Fly   411 FN----PSNN 416
            |.    |:||
 Frog   370 FKRKIIPTNN 379

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sNPF-RNP_001262086.1 7tm_4 75..>196 CDD:304433 51/121 (42%)
7tm_1 80..393 CDD:278431 98/314 (31%)
XB982628XP_002933014.2 7tmA_PrRP_R 79..364 CDD:320516 110/341 (32%)
TM helix 1 80..106 CDD:320516 10/25 (40%)
TM helix 2 113..138 CDD:320516 15/24 (63%)
TM helix 3 152..182 CDD:320516 13/29 (45%)
TM helix 4 193..214 CDD:320516 6/66 (9%)
TM helix 5 240..269 CDD:320516 7/28 (25%)
TM helix 6 289..319 CDD:320516 13/29 (45%)
TM helix 7 332..357 CDD:320516 13/24 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 226 1.000 Inparanoid score I3406
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1072979at2759
OrthoFinder 1 1.000 - - FOG0004089
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24235
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X589
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.070

Return to query results.
Submit another query.