DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG14183 and smid

DIOPT Version :9

Sequence 1:NP_649172.3 Gene:CG14183 / 40192 FlyBaseID:FBgn0036931 Length:872 Species:Drosophila melanogaster
Sequence 2:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster


Alignment Length:943 Identity:195/943 - (20%)
Similarity:345/943 - (36%) Gaps:255/943 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 LKKI-EPPEEKAVSYKIYAELYVLYV---ELVNKLSFIYHNTFQVQKRALVRVLVENAT------ 81
            ||:: |...|.||:.|..|:...::|   |.:.||..:..|      ||  :.|.|:|.      
  Fly   159 LKRLMEEVPEIAVAAKKVAKPNTIHVSSSEAIQKLHQVVGN------RA--KNLSEDAVPRSKDH 215

  Fly    82 -------QQLMQ------LKEELKDLEMSEYIYIDKALIARKLTPRD----LVVWRSPQFLYRRP 129
                   |||.|      |::..:|||:.......:.:.....|.::    |:..:||:|.::  
  Fly   216 RNVPGLYQQLHQNQSRDRLRKFKRDLEVQHPTESFRDIGGMDSTLKELCEMLIHIKSPEFYFQ-- 278

  Fly   130 LDIQNIIADNRLYMNDEEKEEK-------AAQDWVPISE--AVKLI-----QAHERARRARVYKS 180
               ..::....|.::......|       :.|..:|:.|  |.:||     ::.||.|  .|:..
  Fly   279 ---LGLLPSRGLLLHGPPGCGKTFLARAISGQLKMPLMEIPATELIGGISGESEERIR--EVFDQ 338

  Fly   181 NIKYDKKKFLKVHQRKKI--NYKFTFKPDQAMSIPVKRTIFSADFLKADESCENLI-----KKDD 238
            .|.| ....|.:.:...|  |.::..| |....| |.:.|.|.|.|||:|..::::     .:.|
  Fly   339 AIGY-SPCVLFIDEIDAIGGNRQWASK-DMERRI-VSQLISSLDNLKANEFGQSVVVIAATTRPD 400

  Fly   239 VADTAIDDEEALSAIQNNAACKIQSCWRGYKTRKIVKIRKRFKEELYGMKKIRKLKRPNQTANSI 303
            |.|..:   ..:....:..|..|.|   ..:.|:|::|      :..|:....||.         
  Fly   401 VLDPGL---RRIGRFDHEIAIHIPS---RKERREILRI------QCEGLSVDPKLN--------- 444

  Fly   304 MEMYKN--EMLKKKLDEDFINLINDERTRLLQFRSPWMMEDISDHIRAWFKEFYDATGNFHPYPD 366
               |..  |:....:..|.:.|::...:..::.||   |:.        |:|.:.|:        
  Fly   445 ---YDKIAELTPGYVGADLMALVSRAASVAVKRRS---MKK--------FRELHAAS-------- 487

  Fly   367 PVKQGTVLVVID---------ETMTPMEFQESLGKKPLSKAELKKLRDKEKKEKRKKKEKLKQLK 422
              ::....|.:|         ||..|    :|.|::....||.::..|.:|:...|.|.:.....
  Fly   488 --EKNMTTVTLDDDEPSEDAGETPVP----DSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPN 546

  Fly   423 MKEAKRRKKLRDAGVIDIGYELTASKAIENIEETMKKYSKDWRNVDEYLNKNHDPIKEWVTEEQL 487
            ::..|:              ....:.:|::.::|.||.::  :..|..::     :.....||..
  Fly   547 IETPKK--------------ATNGNSSIKSPQKTPKKSAE--KPTDAAMD-----VDNVAPEEPK 590

  Fly   488 AKIHQEV--RGLVDEYMRVEYELLREALAK--DN------DEKY--------KALKVKYPKKKKE 534
            ..:.|||  ....|||    ||.....|..  ||      |..:        .|:||..|..|:|
  Fly   591 KAVEQEVDSSSSNDEY----YEPTLAELTNFLDNPPEEFADPNFCLTLIDFVDAIKVMQPSAKRE 651

  Fly   535 KRKKKPKDMTGDRTLESLYNELKDAGIIEEIGHRDFDEFITDFNFVADDTRDEDGLTTLGPAKGD 599
            .....| |.|.|           |.|.:|:|                   |:|..|..|.|.|  
  Fly   652 GFITVP-DTTWD-----------DIGALEKI-------------------REELKLAVLAPVK-- 683

  Fly   600 IKMVIQESMLGMGEFDVPKPKSLLLIGPLNSGKRLLCEIIASELDAVFMNL-SPENTYKYAKDLK 663
                ..|.:..:|   :..|..:||.||...||.||.:.||:|....|::: .||....|..:.:
  Fly   684 ----YPEMLERLG---LTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESE 741

  Fly   664 YFLHVILKVAKAFQPTIMYIEEAHRLFWKKVPPEAVEINPRLLGTSLASKILKPL---KKNDKIV 725
            ..:....:.|:...|.:::.:|    |....|..:...:....||.:.:::|..:   ::...:.
  Fly   742 RAVRACFQRARNSAPCVIFFDE----FDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVY 802

  Fly   726 LVGTSNMPWAANGGIKR--AFQKVLLI--PKCDYGTSFLLWLELMTEN------APD-DMKEYAY 779
            ::..:|.|...:..|.|  ....:|.:  |:....|..   |:..|:|      |.| |:.|   
  Fly   803 ILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEI---LKATTKNGKRPVLADDVDLDE--- 861

  Fly   780 SALARVLQAYNSGDIDDNVKETLNIDRKMRLKN--EALDP----NEFLEYFLSKNEPPIFPPDEK 838
              :|...:.|...|:...||:......:..|.|  ..||.    ::..:..|.:..|.:...|.|
  Fly   862 --IAAQTEGYTGADLAGLVKQASMFSLRQSLNNGDTNLDDLCVRSQHFQEALQQLRPSVNEQDRK 924

  Fly   839 IMDKFNKWFGSSNKLEKLRKSYMAQKLAKASKK 871
            |.|             |||..|.|.::...:.|
  Fly   925 IYD-------------KLRLKYAAPRVPTLNDK 944

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14183NP_649172.3 AAA 622..751 CDD:278434 28/136 (21%)
smidNP_523959.2 Nucleolin_bd 2..71 CDD:293330
SpoVK 271..919 CDD:223540 157/783 (20%)
AAA 287..418 CDD:278434 31/138 (22%)
P-loop_NTPase 679..>716 CDD:304359 14/45 (31%)
AAA 699..830 CDD:278434 28/134 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0464
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.810

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