DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG14183 and Vcp

DIOPT Version :10

Sequence 1:NP_649172.3 Gene:CG14183 / 40192 FlyBaseID:FBgn0036931 Length:872 Species:Drosophila melanogaster
Sequence 2:NP_446316.1 Gene:Vcp / 116643 RGDID:621595 Length:806 Species:Rattus norvegicus


Alignment Length:279 Identity:65/279 - (23%)
Similarity:126/279 - (45%) Gaps:42/279 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   582 DDTRDEDGLTTLGPAK---GDIKMVIQESMLGMGEF---DVPKPKSLLLIGPLNSGKRLLCEIIA 640
            :::.:|.|...:|..:   ..||.:::..:.....|   .|..|:.:||.||..:||.|:...:|
  Rat   195 EESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVA 259

  Fly   641 SELDAVFMNLS-PENTYKYAKDLKYFLHVILKVAKAFQPTIMYIEEAHRLFWKKVPPEAVEINPR 704
            :|..|.|..:: ||...|.|.:.:..|....:.|:...|.|::|:|...:..|:..... |:..|
  Rat   260 NETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHG-EVERR 323

  Fly   705 LLGTSLASKILKPLKKNDKIVLVGTSNMPWAANGGIKR--AFQKVLLIPKCDYG----TSFLLWL 763
            ::...|.  ::..||:...::::..:|.|.:.:..::|  .|.:     :.|.|    |..|..|
  Rat   324 IVSQLLT--LMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDR-----EVDIGIPDATGRLEIL 381

  Fly   764 ELMTEN---APD-DMKEYAYSALARV------------LQAYNSG-DIDDNVKETLNIDRKMRLK 811
            ::.|:|   |.| |:::.|......|            |||.... |:.|...||  ||.:: :.
  Rat   382 QIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDET--IDAEV-MN 443

  Fly   812 NEALDPNEFLEYFLSKNEP 830
            :.|:..::| .:.||::.|
  Rat   444 SLAVTMDDF-RWALSQSNP 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG14183NP_649172.3 Adgb_C_mid-like <201..>278 CDD:412094
globin helix H 201..232 CDD:412094
IQCD 247..278 CDD:467745
IQ motif 259..277 CDD:412094
P-loop containing Nucleoside Triphosphate Hydrolases 617..750 CDD:476819 32/135 (24%)
VcpNP_446316.1 CDC48 25..764 CDD:273521 65/279 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 708..727
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 768..806
Interaction with UBXN6. /evidence=ECO:0000250 797..806
PIM motif. /evidence=ECO:0000250|UniProtKB:P55072 802..806
Blue background indicates that the domain is not in the aligned region.

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