DRSC/TRiP Functional Genomics Resources

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Protein Alignment kug and pcdh7b

DIOPT Version :10

Sequence 1:NP_001027138.2 Gene:kug / 40191 FlyBaseID:FBgn0261574 Length:4699 Species:Drosophila melanogaster
Sequence 2:NP_001352582.1 Gene:pcdh7b / 555504 ZFINID:ZDB-GENE-081104-299 Length:1242 Species:Danio rerio


Alignment Length:1178 Identity:295/1178 - (25%)
Similarity:458/1178 - (38%) Gaps:297/1178 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly  2579 DFGTYANLYYEIVSEEMKKIFLIDQTTG-VITSKVTFDREK---------KDEYVVLLKVSDGGG 2633
            |.|..|.:......|...:.|.||..|| :.|::...||||         ::|..:..:||..|.
Zfish    49 DLGITAGMDVTFTLESGSEYFKIDNMTGDLSTNERRIDREKLPQCQMIFDENECFIDFEVSVIGP 113

  Fly  2634 KFGFASL---KVIVVDVNDNVPYFLLKEYKMVVSTTVEANQTILTV----KAKDDDIVDNGSVHF 2691
            ...:..|   |||::|:|||.|.|    ...|::.:||.|:.|.|:    .|.|.|...||...:
Zfish   114 AQSWVDLFEGKVIILDINDNTPSF----PSPVLTLSVEENRPIGTLYLLPTATDRDFGRNGIERY 174

  Fly  2692 QIVQKSNDKAVKDVIEINEKTGDIVFKSKAESYGVNSYQFFVRASDRGEPQFHSEVPVSIEIIET 2756
            :::|.:.:..|:.:             ..:.|..|:|:.        |:.:|....         
Zfish   175 ELIQDNGESTVRRI-------------GTSGSGSVDSHS--------GKRRFDEGA--------- 209

  Fly  2757 DANIPTFEKSSVLLKIIESTPPGTVLTKLHMIGNYTFKFSIAADQDHFMISDSGE----LILQQT 2817
                   .:|||                        |:..:|...|       ||    ||::..
Zfish   210 -------SRSSV------------------------FELQVADTTD-------GEKQPQLIIKGA 236

  Fly  2818 LDREQQESHNLIVVAETSTVPVFFAYADVLIDVRDENDNYPKFDNTFYSASVAENSEKVISLVKV 2882
            |||||::|:.|.:.......|...:.|.:.:.:.|.|||.|:|:.:.|.|.:.|||.....::::
Zfish   237 LDREQRDSYELTLRVRDGGDPPRSSQAILRVMITDVNDNTPRFEKSVYEADLPENSSPGAPILQL 301

  Fly  2883 SATDADTGPNGDIRYYLESDTENIQNIFDIDIYSGWITLLTSLDREVQSEYNFKVIAADNGHPKH 2947
            .|.|.|.|.||.|.|...:.||:::.:..:|..:||:::|..:|||..|:..|.|:|.|.|.|..
Zfish   302 KAGDTDVGVNGQIEYVFGAATESVRRLLRLDESTGWLSVLHRIDREDVSQLRFTVMARDRGQPPK 366

  Fly  2948 DAKVPVTIKIVDYNDNAPVFKLPIEGLSVFENALPGTVLINLLLIDPDIEKQEMDFFIVSGDKQA 3012
            ..|..|.|.|.|.|||.|                                               
Zfish   367 TDKATVIINIKDENDNVP----------------------------------------------- 384

  Fly  3013 QFQIGKSGELFIAKPLDREQLMFYNLSIIATDGKFTAKANVEIDVKDINDNTPYCLKPRYHISTN 3077
            ...|.|.|.:|:                  .||    .|||   .:|:..:||..|   ..:|..
Zfish   385 NIDIRKIGRIFL------------------KDG----VANV---AEDVIVDTPIAL---VQVSDR 421

  Fly  3078 ESISIGTTLVEVKAIDFDFQSKLRFYLSGKGADDFSIGKESGILKVASALDRETTPKYKLVAHVQ 3142
            :....|.....|.. |..||.|....:.|      .:.|:...|..::.||.|...:|.:|....
Zfish   422 DKGPNGIVTCTVVG-DVPFQLKPASEVEG------DMNKKKYFLHTSAPLDYEAVQEYNVVIVAV 479

  Fly  3143 DGKDFTQECFSEIIITVNDINDNMPIFSMAQYRVSVPEDAQLNTLITKVHAMDKDFGVNRQIKYS 3207
            |....:....:.:|:.|.|:|||.|:||.:...||.||:......:..|.|:|.|.|.|.:|.||
Zfish   480 DSGSPSLSSNNSLIVKVGDMNDNPPVFSKSTVEVSFPENNAPGERVVTVVALDADSGKNAEISYS 544

  Fly  3208 LMGENHDYFKISKSTGIIRLHKSLDRETISLFNLTVKAEDCGVPKLHSIATVAVNILDINDNPPE 3272
            |....:..|.|...||.||::..||||....:...|.|:|.|:|.|...|||.|.:.|.|||.|:
Zfish   545 LDSSVNGIFSIDADTGDIRVNTILDREQTERYEFKVIAKDKGMPVLQGSATVVVLVADKNDNEPK 609

  Fly  3273 FSMRQYSCKILENATHGTEVCKVYATSIDIGVNADIHYFIMSGNEQGKFKMDSTTGDLVLNATLD 3337
            |....::..|.||....:.|..:.....|.|.|||:..:|  ..|:..|.:|:.||.:..|...|
Zfish   610 FMQDVFTFYIQENLQPNSPVGMITVMDADKGQNADMSLYI--EEEENIFSIDNNTGTIFSNMAFD 672

  Fly  3338 YEMSKFYFLTIQAIDGGTPPLSNNAYVNISILDINDNSPTFL---QNLYRI-----NVNEDIFVG 3394
            .|....|...::|:|||.||.|..|.|::|::|:|||.||.|   .|.|.:     |:.      
Zfish   673 REQRNNYSFRVKAVDGGDPPRSATATVSLSVMDVNDNPPTVLFPMNNSYTLLPPSSNIR------ 731

  Fly  3395 SKILDVKATDEDSDVNGLVTYNIERGDNIGQFSIDPKNGTISVSRPLDRETISHYTLEIQACDQG 3459
            :.:..|.|||.|:.||..::|.|..|:....|.:|...|.||:...|:::....:.|.:|..|.|
Zfish   732 TVVRTVSATDTDTGVNANLSYRIVGGNPFKLFDMDAWTGVISLVGKLEQKHFGLHRLVVQVNDSG 796

  Fly  3460 DPQRCNSVPININI-----------------LDTNDNAPIFSSSNYSVVLQENRL---LGYV--F 3502
            .|.:..:..::|.:                 |.|..||.|....||.  |.:.||   :|.|  .
Zfish   797 VPSQSTTTLVHIYVNETLFNSTIVEAQVAKSLSTPLNADIAGDPNYD--LGKQRLSIAIGVVSGI 859

  Fly  3503 LT---------------------FKISDADETPNTTPYTFDIRSGNEGGLFRLEQD--------- 3537
            :|                     ::....|.....||...|     :|...:.:::         
Zfish   860 MTVILIILVVVMARYCRPKNKNGYEAGKKDHEDFFTPQQHD-----KGKKPKKDKNKKKSKQPLY 919

  Fly  3538 GSLRTASRFNHNLQDEFVIQVRVFDN-------------GTPPL-----YSDAWVVVKIIEES-- 3582
            .|:.|......|.|....:..::.|:             |:|.|     .|.....|::..:|  
Zfish   920 SSIVTVEASKPNGQRYDGVNEKLSDSPGMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPT 984

  Fly  3583 ---------QYPPIVTPLEVTINSFEDDFSGAFIGKVHASDQ-----DKYDE-----LNFSLVSG 3628
                     ..||        .|:|........||..|.|:.     :||::     :.||:||.
Zfish   985 AGKKHQAVQDLPP--------ANTFVGTGDNISIGSDHCSEYSSQTINKYNKQPFRRVTFSVVSQ 1041

  Fly  3629 PDDMYQSS 3636
            |.|.:|.|
Zfish  1042 PQDPHQGS 1049

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kugNP_001027138.2 Cadherin_repeat 66..178 CDD:206637
Cadherin_repeat 187..285 CDD:206637
Cadherin_repeat 404..503 CDD:206637
Cadherin_repeat 513..609 CDD:206637
Cadherin_repeat 622..708 CDD:206637
Cadherin_repeat 776..873 CDD:206637
Cadherin_repeat 883..976 CDD:206637
Cadherin_repeat 984..1082 CDD:206637
Cadherin_repeat 1092..1189 CDD:206637
Cadherin_repeat 1197..1295 CDD:206637
Cadherin_repeat 1303..1386 CDD:206637
Cadherin_repeat 1413..1502 CDD:206637
Cadherin_repeat 1510..1608 CDD:206637
Cadherin_repeat 1621..1713 CDD:206637
Cadherin_repeat 1724..1811 CDD:206637
Cadherin_repeat 1819..1927 CDD:206637
Cadherin_repeat 1948..2030 CDD:206637
Cadherin_repeat 2037..2136 CDD:206637
Cadherin_repeat 2144..2235 CDD:206637
Cadherin_repeat 2246..2336 CDD:206637
Cadherin_repeat 2345..2445 CDD:206637
Cadherin_repeat 2453..2545 CDD:206637
Cadherin_repeat 2555..>2633 CDD:206637 17/63 (27%)
Cadherin_repeat 2658..2759 CDD:206637 18/104 (17%)
Cadherin_repeat 2774..2856 CDD:206637 18/85 (21%)
Cadherin_repeat 2865..2963 CDD:206637 35/97 (36%)
Cadherin_repeat 2974..3063 CDD:206637 10/88 (11%)
Cadherin_repeat 3072..3165 CDD:206637 20/92 (22%)
Cadherin_repeat 3173..3269 CDD:206637 36/95 (38%)
Cadherin_repeat 3277..3374 CDD:206637 31/96 (32%)
Cadherin_repeat 3383..3479 CDD:206637 26/117 (22%)
Cadherin_repeat 3488..3579 CDD:206637 22/143 (15%)
Cadherin_repeat 3590..3681 CDD:206637 16/57 (28%)
EGF_CA 3866..3903 CDD:238011
Laminin_G_2 3953..4077 CDD:460494
EGF_CA <4121..4150 CDD:238011
EGF_CA 4152..4189 CDD:238011
EGF_CA 4195..4225 CDD:238011
EGF_CA 4227..4262 CDD:214542
pcdh7bNP_001352582.1 Cadherin_repeat 28..133 CDD:206637 24/83 (29%)
Cadherin_repeat 141..275 CDD:206637 39/201 (19%)
Cadherin_repeat 283..382 CDD:206637 35/98 (36%)
Cadherin_repeat 400..502 CDD:206637 27/114 (24%)
Cadherin_repeat 512..606 CDD:206637 36/93 (39%)
Cadherin_repeat 614..709 CDD:206637 31/96 (32%)
Cadherin_repeat 720..810 CDD:206637 24/95 (25%)
Protocadherin 813..1024 CDD:462451 37/225 (16%)
Blue background indicates that the domain is not in the aligned region.

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