DRSC/TRiP Functional Genomics Resources

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Protein Alignment kug and Pcdhga3

DIOPT Version :10

Sequence 1:NP_001027138.2 Gene:kug / 40191 FlyBaseID:FBgn0261574 Length:4699 Species:Drosophila melanogaster
Sequence 2:NP_001032231.1 Gene:Pcdhga3 / 498847 RGDID:1598664 Length:929 Species:Rattus norvegicus


Alignment Length:761 Identity:211/761 - (27%)
Similarity:335/761 - (44%) Gaps:100/761 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly  2909 IFDIDIYSGWITLLTSLDRE---VQSE---YNFKVIAADNGHPKHDAKV-PVTIKIVDYNDNAPV 2966
            :|.:|..||.:.....:|||   .||.   .:|.::..|.      .|: .|.:.|.|.|||||.
  Rat    71 LFSLDPRSGSLVTAGRIDREELCAQSAPCVVSFNILVEDK------LKIFEVEVDISDINDNAPS 129

  Fly  2967 FKLPIEGL--SVFENALPGTVLINLLLIDPDIEKQEMDFFIVSGDKQAQFQI------GKSGELF 3023
            |  |.|.|  .:.|..:|||........|||:....:..:.::.:......:      .|..||.
  Rat   130 F--PTEELEIKIGELTVPGTRFPLKTAFDPDVGMNSLQNYKLNSNDYFSLAVNSVIDDAKYPELV 192

  Fly  3024 IAKPLDREQLMFYNLSIIATDG---KFTAKANVEIDVKDINDNTPYCLKPRYHISTNESISIGTT 3085
            :.:.||||:...:.|.:||:||   ..|.|..:::.|.|.|||.|...||.|.:|..|::.:||.
  Rat   193 LERALDREKKAVHQLDLIASDGGDPAHTGKLCIQVIVLDANDNPPVFTKPEYRVSVLENVPVGTR 257

  Fly  3086 LVEVKAIDFD--FQSKLRFYLS---GKGADDFSIGKESGILKVASALDRETTPKYKLVAHVQDGK 3145
            |..|.|.|.|  |.:::.:.|.   ||.|..|.:...:|.:.:..:||.|....|::....|||.
  Rat   258 LTTVNATDPDEGFNAQVSYILDKMPGKIAQIFHLNSVTGDVSILKSLDYEDAVFYEIKIEAQDGP 322

  Fly  3146 DFTQECFSEIIITVNDINDNMPIFSMAQYRVSVPEDAQLNTLITKVHAMDKDFGVNRQIKYSLMG 3210
            .....  ::|::||.|:|||.|..|:.....||||:|.....|..::..|:|.|.|.|:...::|
  Rat   323 GLFSR--AKILVTVLDVNDNAPEISVTSLTSSVPEEAPAGREIALINVHDRDSGQNGQVSVFVLG 385

  Fly  3211 ENHDYFKISKSTG-IIRL--HKSLDRETISLFNLTVKAEDCGVPKLHSIATVAVNILDINDNPPE 3272
            ...  |.:.||.. ..||  .:|||.|..|.:|::::|.|.|.|.|.:...:.:::.|||||||.
  Rat   386 NLP--FTLEKSIDQYYRLVTARSLDHEKESQYNISLRATDGGSPPLSTETHITLHVTDINDNPPT 448

  Fly  3273 FSMRQYSCKILENATHGTEVCKVYATSIDIGVNADIHYFIMSGNEQGK-----FKMDSTTGDLVL 3332
            |:...|...|.||...|..:..|.|...|...||.|.|.:.....||.     ..::|.||.|..
  Rat   449 FTRASYLAYIPENNARGASIFSVTAQDPDTDKNAQITYSLAEDTLQGVPLSSFVSINSNTGVLYA 513

  Fly  3333 NATLDYEMSKFYFLTIQAIDGGTPPLSNNAYVNISILDINDNSPTFLQNLYRINVNEDIFV---- 3393
            ..:.|||..:...|.|.|.|.|.||||:|:.:::.:||.|||||..|.....::.:..:.:    
  Rat   514 LCSFDYEQFRDLQLHITARDSGNPPLSSNSTLSLFVLDKNDNSPEILYPALPVDGSTGVELAPRS 578

  Fly  3394 ---GSKILDVKATDEDSDVNGLVTYNIERGDNIGQFSIDPKNGTISVSRP-LDRETISHYTLEIQ 3454
               |..:..|.|.|:||..|..::|.:.:....|.||:....|.:..:|. |||:.:.. :|.:.
  Rat   579 AEPGYLVTKVVAVDKDSGQNSWLSYRLIKASEPGLFSVGLHTGEVRTARALLDRDALKQ-SLVVA 642

  Fly  3455 ACDQGDPQRCNSVPININILDT-----NDNAPIFSSSN--------YSVVLQENRLLGYVFLTFK 3506
            ..|.|.|....:|.:.|.:.|:     .|...|.:.:|        |.||..  ..:..:||.|.
  Rat   643 VQDHGQPPLSATVTLTIAVADSIPDILGDLESIHTPANPKNSDLTLYLVVAV--AAVSCIFLAFV 705

  Fly  3507 I-----------------SDADETPNTTPYTFDIRSGNEGGLFRLEQDGSLRTASRFNHNLQDEF 3554
            |                 :..:.........|....|.:..|....|:.||...||.:|.:..: 
  Rat   706 IVLLALRLRRWHSSRLLQASGNGLAGIPASHFVGVDGVQAFLQTYSQEVSLTAGSRKSHLIFPQ- 769

  Fly  3555 VIQVRVFDNGTPPLYSDAWVVVKIIEESQYPPIVTPLEVTINSFED 3600
                        |.|:|..:..:...:|:  |::.|.:: :.:.||
  Rat   770 ------------PNYADTLISQESCGKSE--PLIIPQDL-LETQED 800

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kugNP_001027138.2 Cadherin_repeat 66..178 CDD:206637
Cadherin_repeat 187..285 CDD:206637
Cadherin_repeat 404..503 CDD:206637
Cadherin_repeat 513..609 CDD:206637
Cadherin_repeat 622..708 CDD:206637
Cadherin_repeat 776..873 CDD:206637
Cadherin_repeat 883..976 CDD:206637
Cadherin_repeat 984..1082 CDD:206637
Cadherin_repeat 1092..1189 CDD:206637
Cadherin_repeat 1197..1295 CDD:206637
Cadherin_repeat 1303..1386 CDD:206637
Cadherin_repeat 1413..1502 CDD:206637
Cadherin_repeat 1510..1608 CDD:206637
Cadherin_repeat 1621..1713 CDD:206637
Cadherin_repeat 1724..1811 CDD:206637
Cadherin_repeat 1819..1927 CDD:206637
Cadherin_repeat 1948..2030 CDD:206637
Cadherin_repeat 2037..2136 CDD:206637
Cadherin_repeat 2144..2235 CDD:206637
Cadherin_repeat 2246..2336 CDD:206637
Cadherin_repeat 2345..2445 CDD:206637
Cadherin_repeat 2453..2545 CDD:206637
Cadherin_repeat 2555..>2633 CDD:206637
Cadherin_repeat 2658..2759 CDD:206637
Cadherin_repeat 2774..2856 CDD:206637
Cadherin_repeat 2865..2963 CDD:206637 16/60 (27%)
Cadherin_repeat 2974..3063 CDD:206637 25/99 (25%)
Cadherin_repeat 3072..3165 CDD:206637 29/97 (30%)
Cadherin_repeat 3173..3269 CDD:206637 31/98 (32%)
Cadherin_repeat 3277..3374 CDD:206637 34/101 (34%)
Cadherin_repeat 3383..3479 CDD:206637 23/108 (21%)
Cadherin_repeat 3488..3579 CDD:206637 19/107 (18%)
Cadherin_repeat 3590..3681 CDD:206637 3/11 (27%)
EGF_CA 3866..3903 CDD:238011
Laminin_G_2 3953..4077 CDD:460494
EGF_CA <4121..4150 CDD:238011
EGF_CA 4152..4189 CDD:238011
EGF_CA 4195..4225 CDD:238011
EGF_CA 4227..4262 CDD:214542
Pcdhga3NP_001032231.1 Cadherin_2 27..109 CDD:462413 10/37 (27%)
Cadherin_repeat 134..235 CDD:206637 25/100 (25%)
Cadherin_repeat 243..340 CDD:206637 29/98 (30%)
Cadherin_repeat 352..445 CDD:206637 31/94 (33%)
Cadherin_repeat 453..555 CDD:206637 34/101 (34%)
Cadherin_repeat 576..663 CDD:206637 22/87 (25%)
Cadherin_C_2 685..769 CDD:465139 16/85 (19%)
Cadherin_tail 808..>902 CDD:435046
Blue background indicates that the domain is not in the aligned region.

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