DRSC/TRiP Functional Genomics Resources

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Protein Alignment kug and pcdh2ab5

DIOPT Version :10

Sequence 1:NP_001027138.2 Gene:kug / 40191 FlyBaseID:FBgn0261574 Length:4699 Species:Drosophila melanogaster
Sequence 2:NP_001008483.3 Gene:pcdh2ab5 / 493591 ZFINID:ZDB-GENE-041118-4 Length:941 Species:Danio rerio


Alignment Length:714 Identity:220/714 - (30%)
Similarity:319/714 - (44%) Gaps:119/714 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   780 SINESVQLGETVAWIEAKDRDLGYN--GKLVFAISDGDYDSVFRIDPDRGELQIIGYLDRER--- 839
            |::|.|..|.||..: |||.:|...  ...:|.|..|.....|.::...|.|.:...:|||.   
Zfish    33 SVSEEVSPGTTVGNL-AKDLNLNVQELESRMFQIVTGAKKKYFEVNLKTGFLYVNERIDREELCA 96

  Fly   840 -------QNEYVLNITVYDLGNPTKSTSKMLPITILDVNDNRPVIQKTLATFRLTESARIGTVVH 897
                   ..|.|:|       ||.|  ...:.|.|:|||||:|..........:.|:...|....
Zfish    97 KAPKCTVSVEAVIN-------NPLK--LYQIEINIVDVNDNKPTFNSKTQYLDVAENTLPGVKFP 152

  Fly   898 CLHATDADSGINAQVTYALSV-ECSDFTVN-----ATTGCLRLNKPLDREKQDNYALHITAKDGG 956
            ..:|:|||.|.|...||.||. |.....|:     :.:..|.|.|.||||||....|.:||.|||
Zfish   153 LSYASDADVGKNTVSTYKLSQNEYFSLAVHKGEEQSVSAELVLQKALDREKQPLVQLTLTAADGG 217

  Fly   957 SPVLSSEALVYVLVDDVNDNAPVFGVQEYIFKVREDLPRGTVLAVIEAVDEDIGPNAEIQFSLKE 1021
            :|..|..:.:.:.|.|:|||||||....|...:.|::|.|:.:.:|.|.|:|.|.|::|.:||:|
Zfish   218 NPPKSGTSQIIIRVLDINDNAPVFSRPLYKASLVENVPIGSTVIIINATDKDEGTNSDIIYSLRE 282

  Fly  1022 ETQDE--ELFRIDKHTGAIRTQGYLDYENKQVHNLIVSAIDGGDPSLTSDMSIVIMIIDVNENRF 1084
            ..||.  ::|:||..||||..:|.:::|......:...|.|.|.|.:::...:::.::|:|:|. 
Zfish   283 TDQDHILDIFQIDAITGAITVKGDVNFEKNNAFEIRAQASDKGQPPMSTHCKVLVEVLDINDNE- 346

  Fly  1085 APEFDDFVYEGKVKENKPKGTFVMNVTARDMD-----------------TVDLNSKITYSITGGD 1132
             ||.........|||:...||.|..|:..|.|                 .:..|.|..||:. .|
Zfish   347 -PEITVTSLLSTVKEDASIGTAVALVSVIDRDGGRNGVVNCAVSNNVPFKLQTNYKNYYSLV-VD 409

  Fly  1133 GLGIFAVNDQGSITSLSQLDAETKNFYWLTLCAQDCAIVPLSNCVEVYIQVENENDNIPLTDKPV 1197
            |                .||.|..:.|.:|:.|.|....|||:...:.:.|.:.|||.|...:||
Zfish   410 G----------------PLDRERASEYNVTISAADEGTPPLSSTSVIAVHVSDVNDNAPRFPEPV 458

  Fly  1198 YYVNVTEASVENVEIITLKAFDPDIDPTQTITYNIV----SGNLVGYFEIDSKTG---------- 1248
            ..|.|.|.|.....:.|:.|.|||:.....|||:::    ||.:.....|:|.||          
Zfish   459 INVYVKENSQIGAVLHTVSAVDPDVGDNARITYSLLESSNSGPVTSMININSDTGDLHSLQSFNY 523

  Fly  1249 -VIKTTERKLDRENQAEHILEVAISDNGSPVLSSTSRIVVSVLDINDNSP----EFDQ--RVYKV 1306
             .|||.|.|            |..:|:|.|.|||...:.|.|||.|||||    .:.:  .|...
Zfish   524 EEIKTFEFK------------VQATDSGVPPLSSNVTVNVFVLDENDNSPAILAPYSELGSVNTE 576

  Fly  1307 QVPSSATVNQSIFQVHAIDSDSGENGRITYSIKSGKGKNKFRIDSQRGHIHIAKPLDSDNEFEIH 1371
            .:|.||.....:.::.|:|:|||.|..::|.|...||.|.|||.:..|.|...:.: |||:.:.|
Zfish   577 NIPYSAEAGYFVAKIRAVDADSGYNALLSYHISEPKGNNLFRIGTSSGEIRTKRRM-SDNDLKTH 640

  Fly  1372 ---IKAEDNGIPKKSQTARVNIVVV-------------PVNPNS---QNAPLIVRKTSENVVDL 1416
               |...|||.|..|.|..::.|||             ||...|   .|..|::...|.:|:.|
Zfish   641 PLVILVCDNGEPSLSATVSIDAVVVESGGDVKTPFRHAPVKEESFSDLNLYLLIAIVSVSVIFL 704

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kugNP_001027138.2 Cadherin_repeat 66..178 CDD:206637
Cadherin_repeat 187..285 CDD:206637
Cadherin_repeat 404..503 CDD:206637
Cadherin_repeat 513..609 CDD:206637
Cadherin_repeat 622..708 CDD:206637
Cadherin_repeat 776..873 CDD:206637 30/104 (29%)
Cadherin_repeat 883..976 CDD:206637 34/98 (35%)
Cadherin_repeat 984..1082 CDD:206637 31/99 (31%)
Cadherin_repeat 1092..1189 CDD:206637 27/113 (24%)
Cadherin_repeat 1197..1295 CDD:206637 36/112 (32%)
Cadherin_repeat 1303..1386 CDD:206637 30/85 (35%)
Cadherin_repeat 1413..1502 CDD:206637 2/4 (50%)
Cadherin_repeat 1510..1608 CDD:206637
Cadherin_repeat 1621..1713 CDD:206637
Cadherin_repeat 1724..1811 CDD:206637
Cadherin_repeat 1819..1927 CDD:206637
Cadherin_repeat 1948..2030 CDD:206637
Cadherin_repeat 2037..2136 CDD:206637
Cadherin_repeat 2144..2235 CDD:206637
Cadherin_repeat 2246..2336 CDD:206637
Cadherin_repeat 2345..2445 CDD:206637
Cadherin_repeat 2453..2545 CDD:206637
Cadherin_repeat 2555..>2633 CDD:206637
Cadherin_repeat 2658..2759 CDD:206637
Cadherin_repeat 2774..2856 CDD:206637
Cadherin_repeat 2865..2963 CDD:206637
Cadherin_repeat 2974..3063 CDD:206637
Cadherin_repeat 3072..3165 CDD:206637
Cadherin_repeat 3173..3269 CDD:206637
Cadherin_repeat 3277..3374 CDD:206637
Cadherin_repeat 3383..3479 CDD:206637
Cadherin_repeat 3488..3579 CDD:206637
Cadherin_repeat 3590..3681 CDD:206637
EGF_CA 3866..3903 CDD:238011
Laminin_G_2 3953..4077 CDD:460494
EGF_CA <4121..4150 CDD:238011
EGF_CA 4152..4189 CDD:238011
EGF_CA 4195..4225 CDD:238011
EGF_CA 4227..4262 CDD:214542
pcdh2ab5NP_001008483.3 None
Blue background indicates that the domain is not in the aligned region.

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