DRSC/TRiP Functional Genomics Resources

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Protein Alignment kug and Pcdhb1

DIOPT Version :10

Sequence 1:NP_001027138.2 Gene:kug / 40191 FlyBaseID:FBgn0261574 Length:4699 Species:Drosophila melanogaster
Sequence 2:NP_001014800.1 Gene:Pcdhb1 / 364841 RGDID:1308760 Length:818 Species:Rattus norvegicus


Alignment Length:832 Identity:227/832 - (27%)
Similarity:364/832 - (43%) Gaps:149/832 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   646 ISYRLSDGNEDGCFNLDPTSGSLSISCDLKKTTLTNRILKVSATDGT--HF-----SDDLIINVH 703
            |.|.:::..|.|.|     ..:::....|:...|..|..::.| :|.  ||     :.||.:...
  Rat    31 IRYSVAEEMESGSF-----VANVAKDLGLEVGKLAERGARLVA-EGNRLHFRLHRKTGDLFVKEK 89

  Fly   704 LMPEDLGG--DSSILHGFGSFECRETGVARRLAETLSLAEKNNVKSASPSVFSDLSLTPSRYGQN 766
            |..|.|.|  |..:||    ||             :.|||..........|| |:         |
  Rat    90 LDREALCGKADPCVLH----FE-------------IILAEPLQSFRVEVRVF-DI---------N 127

  Fly   767 VHRPEFVNFPQELSINESVQLGETVAWIEAKDRDLGYNGKLVFAISDGDY---DSVFRI-DPDRG 827
            .:.|.|:|....|.|.||..||.......|:|.|:|.||...:.:|...|   .:.||. .|...
  Rat   128 DNAPVFLNKEPLLKIPESTPLGSRFPLQSAQDLDVGLNGLQNYTLSANTYFHLHTRFRSHGPKYA 192

  Fly   828 ELQIIGYLDRERQNEYVLNITVYDLGNPTKSTSKMLPITILDVNDNRPVIQKTLATFRLTESARI 892
            ||.:...||||.|.|..|.||..|.|:|.||.:..:.:.:|||||:.|...:.:...::.|::..
  Rat   193 ELVLDNPLDREAQPEVNLTITAVDGGSPPKSGTANIRVVVLDVNDHVPQFSRLVYRAQVPENSDN 257

  Fly   893 GTVVHCLHATDADSGINAQVTYALS----VECSDFTVNATTGCLRLNKPLDREKQDNYALHITAK 953
            |::|..:.|||.|.|.|.|:||:|:    .....|.|:..||.:||..|||.|..:.|.:.|.|.
  Rat   258 GSLVVVVTATDLDEGTNKQITYSLAENPEAVLRTFLVDPQTGEVRLRGPLDFETIETYDIDIQAT 322

  Fly   954 DGGSPVLSSEALVYVLVDDVNDNAPVFGVQEYIFKVREDLPRGTVLAVIEAVDEDIGPNAEIQFS 1018
            |||.  ||:.:.|.|.|.|||||.|...:......:.||.|..||:|:....|.|:....:|...
  Rat   323 DGGG--LSAHSKVLVEVVDVNDNPPEVTISSVSSPLAEDSPLQTVVALFTIRDRDVRVGGKITCF 385

  Fly  1019 LKEETQDEELFRIDKHT----GAIRTQGYLDYENKQVHNLIVSAIDGGDPSLTSDMSIVIMIIDV 1079
            ||     |:|..:.|||    .::.|...||.|:...:|:.:.|:|.|.|||:::..|.::|.|:
  Rat   386 LK-----EDLPFVVKHTFRNSYSLVTDRILDREDVSNYNITLVAMDTGPPSLSTETVIEVVISDI 445

  Fly  1080 NENRFAPEFDDFVYEGKVKENKPKGTFVMNVTARDMDTVDLNSKITYSI---TGGDGLGIFAV-- 1139
            |:|  :|.|.:..|...|:||.....|:..|.|.|:|..: |:::|||:   ..|| |.:||.  
  Rat   446 NDN--SPVFQEDSYVLTVRENNSPAVFIGKVHAEDLDLGE-NAQVTYSLLPPKSGD-LSVFAYIS 506

  Fly  1140 --NDQGSITSLSQLDAETKNFYWLTLCAQDCAIVPLSNCVEVYIQVENENDNIPLTDKPVY---- 1198
              :|.|.:.:|..:|.|....:...:.|.|...:.||:.|.|.:.|.::|||.|:...|:.    
  Rat   507 INSDNGKLYALRTMDYEAIQDFQFVVKATDGGFLSLSSQVTVRVVVLDDNDNRPMILYPLQNGTL 571

  Fly  1199 -YVNVTEASVENVEIIT-LKAFDPDIDPTQTITYNIVSGNLVGYFEIDSKTGVIKTTERKLDREN 1261
             ..::...|.|...::| :.|.|.|......::|:::....:|.|.:..:.|.|:|..:..:|:.
  Rat   572 PCNDLVPRSAEAGYLVTKVVAVDGDSGQNSWLSYHLLKATDLGLFSVQRQNGEIRTLRQISERDP 636

  Fly  1262 QAEHILEVAISDNGSPVLSSTSRIVVSVLDINDNSPEFDQRVYKVQVPS--SATVNQS------- 1317
            ..:.:: :.:.|:|.|.||:|:.:.:.::|      .|.:...:.|.||  |..||.:       
  Rat   637 MMQKLV-ILVQDHGQPALSTTASLNILLVD------GFSEPYLQFQDPSKHSRKVNPTTKYLVIS 694

  Fly  1318 --------IFQVHAIDSDSGENGRITYSIKSGKGKNKFRIDSQ--------------RGHIHIAK 1360
                    :|.|..|        .|.:..:..|.:.||.:...              ||:..:::
  Rat   695 LAVLSFLFLFSVTVI--------IIIHLYQKIKHREKFTVQEHFYDDCNFPNNLVQGRGNGSLSQ 751

  Fly  1361 PLDSD---------NEFEI---------------HIKAE-DNGIPKKSQTAR 1387
            |...|         :||..               .:|.| |..:|..|...|
  Rat   752 PCPYDMCSATGTGNSEFRFLKRFMPNFPFPHATGEVKTENDASLPPDSNRNR 803

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kugNP_001027138.2 Cadherin_repeat 66..178 CDD:206637
Cadherin_repeat 187..285 CDD:206637
Cadherin_repeat 404..503 CDD:206637
Cadherin_repeat 513..609 CDD:206637
Cadherin_repeat 622..708 CDD:206637 15/68 (22%)
Cadherin_repeat 776..873 CDD:206637 37/100 (37%)
Cadherin_repeat 883..976 CDD:206637 37/96 (39%)
Cadherin_repeat 984..1082 CDD:206637 31/101 (31%)
Cadherin_repeat 1092..1189 CDD:206637 31/103 (30%)
Cadherin_repeat 1197..1295 CDD:206637 20/103 (19%)
Cadherin_repeat 1303..1386 CDD:206637 24/138 (17%)
Cadherin_repeat 1413..1502 CDD:206637
Cadherin_repeat 1510..1608 CDD:206637
Cadherin_repeat 1621..1713 CDD:206637
Cadherin_repeat 1724..1811 CDD:206637
Cadherin_repeat 1819..1927 CDD:206637
Cadherin_repeat 1948..2030 CDD:206637
Cadherin_repeat 2037..2136 CDD:206637
Cadherin_repeat 2144..2235 CDD:206637
Cadherin_repeat 2246..2336 CDD:206637
Cadherin_repeat 2345..2445 CDD:206637
Cadherin_repeat 2453..2545 CDD:206637
Cadherin_repeat 2555..>2633 CDD:206637
Cadherin_repeat 2658..2759 CDD:206637
Cadherin_repeat 2774..2856 CDD:206637
Cadherin_repeat 2865..2963 CDD:206637
Cadherin_repeat 2974..3063 CDD:206637
Cadherin_repeat 3072..3165 CDD:206637
Cadherin_repeat 3173..3269 CDD:206637
Cadherin_repeat 3277..3374 CDD:206637
Cadherin_repeat 3383..3479 CDD:206637
Cadherin_repeat 3488..3579 CDD:206637
Cadherin_repeat 3590..3681 CDD:206637
EGF_CA 3866..3903 CDD:238011
Laminin_G_2 3953..4077 CDD:460494
EGF_CA <4121..4150 CDD:238011
EGF_CA 4152..4189 CDD:238011
EGF_CA 4195..4225 CDD:238011
EGF_CA 4227..4262 CDD:214542
Pcdhb1NP_001014800.1 Cadherin_2 30..110 CDD:462413 23/101 (23%)
Cadherin_repeat 140..238 CDD:206637 37/97 (38%)
Cadherin_repeat 246..343 CDD:206637 37/98 (38%)
CA 372..450 CDD:214520 26/84 (31%)
Cadherin_repeat 456..558 CDD:206637 31/103 (30%)
Cadherin_repeat 577..665 CDD:206637 19/88 (22%)
Cadherin_C_2 686..772 CDD:465139 13/93 (14%)
Blue background indicates that the domain is not in the aligned region.

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