DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kug and Pcdh1

DIOPT Version :10

Sequence 1:NP_001027138.2 Gene:kug / 40191 FlyBaseID:FBgn0261574 Length:4699 Species:Drosophila melanogaster
Sequence 2:XP_038953281.1 Gene:Pcdh1 / 307481 RGDID:1308490 Length:1231 Species:Rattus norvegicus


Alignment Length:1149 Identity:274/1149 - (23%)
Similarity:452/1149 - (39%) Gaps:297/1149 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   703 HLMPEDLGGDSSILHG-FGSFECRETGVARRLAETLSLAEKNNVKSASPSVFS-DLSLT------ 759
            ||...::|.....:.| .|.....||.:.|.     .|.|..|..|.||.:.. ::|:|      
  Rat    81 HLYKLEVGAPYLRVDGKTGDIFTTETSIDRE-----GLRECQNQISGSPCILEFEVSITDLVQNG 140

  Fly   760 -PSRY-GQ------NVHRPEFVNFPQELSINESVQLGETVAWIEAKDRDLGYNGKLVFAISDG-D 815
             |... ||      |.:.|.|.:....|:|.|:..:|.......|.|||.|.||...:.:..| :
  Rat   141 SPRLLEGQIEVQDINDNTPNFASPVITLAIPENTNIGSLFPIPLATDRDAGPNGVASYELQAGPE 205

  Fly   816 YDSVF--RIDPDRGELQ----IIGYLDRERQNEYVLNITVYDLGNPTKSTSKMLPITILDVNDNR 874
            ...:|  ::..|:.|.|    ::|.|||||.:.|.|.|.|.|.|:|.:::|.:|.:|:||.|||.
  Rat   206 AQELFGLQVAEDQEEKQPQLIVMGNLDRERWDSYDLTIKVQDGGSPPRASSALLRVTVLDTNDNA 270

  Fly   875 PVIQKTLATFRLTESARIGTVVHCLHATDADSGINAQVTY----ALSVECSDFTVNATTGCLRLN 935
            |..::......|:|::.||..|..:.|.|:|.|.||::.|    |..|......::..||.:.:.
  Rat   271 PKFERPTYEAELSENSPIGHSVIQVKANDSDQGANAEIDYTFHQAPEVVRRLLRLDRNTGLITVQ 335

  Fly   936 KPLDREKQDNYALHITAKDGGSPVLSSEALVYVLVDDVNDNAPVFGV--------QEYIFKVRED 992
            .|:|||........:.|||.|:...|:.|.|.|.|.|:|||||...:        |:.:..:.||
  Rat   336 GPVDREDLSTLRFSVLAKDRGANPKSARAQVVVTVKDMNDNAPTIEIRGIGLVTHQDGMANISED 400

  Fly   993 LPRGTVLAVIEAVDEDIGPNA--------EIQFSLKEETQDEELFRIDKHTGA-------IRTQG 1042
            :...|.:|:::..|.|.|.||        ::.|.|::.::          ||:       ::|..
  Rat   401 VAEETAVALVQVSDRDEGENAAVTCVVAGDVPFQLRQASE----------TGSDSKKKYFLQTTT 455

  Fly  1043 YLDYENKQVHNLIVSAIDGGDPSLTSDMSIVIMIIDVNENRFAPEFDDFVYEGKVKENKPKGTFV 1107
            .||||..:.:.:.:.|:|.|:|.|:|..|:.:.::|||:|  ||.|...:.|....||...|..|
  Rat   456 PLDYEKVKDYTIEIVAVDSGNPPLSSTNSLRVQVVDVNDN--APVFTQSITEVAFPENNKPGEVV 518

  Fly  1108 MNVTARDMDTVDLNSKITYSITGGDGLGIFAVNDQGSITSLSQLDAETKNFYWLTLCAQDCAIVP 1172
            ..|||.|.|: ..|:::.||:                                            
  Rat   519 AEVTASDADS-GSNAELVYSL-------------------------------------------- 538

  Fly  1173 LSNCVEVYIQVENENDNIPLTDKPVYYVNVTEASVENVEIITLKAFDPDIDPTQTITYNIVSGNL 1237
                                                          :|  :|...          
  Rat   539 ----------------------------------------------EP--EPAAQ---------- 545

  Fly  1238 VGYFEIDSKTGVIKTTERKLDRENQAEHILEVAISDNGSPVLSSTSRIVVSVLDINDNSPEFDQR 1302
             |.|.|..:.|.:: .:..||||.:..:.|:|..:|.|||.|..|:.::|:|||.|||.|:|...
  Rat   546 -GLFTISPENGEVR-VKTSLDREQRDSYELKVVAADRGSPSLQGTATVLVNVLDCNDNDPKFMLS 608

  Fly  1303 VYKVQVPSSATVNQSIFQVHAIDSDSGENGRITYSIKSGKGKNKFRIDSQRGHIHIAKPLDSDNE 1367
            .|...|..:......:..|..||.|.|||.|:..|::...|  .|.|.:..|.|..:...|.:.:
  Rat   609 GYNFSVMENMPALSPVGMVTVIDGDKGENARVQLSVEQDNG--DFVIQNGTGTILSSLSFDREQQ 671

  Fly  1368 --FEIHIKAEDNGIPKKSQTARVNIVVVPVNPNSQNAPLIVRKTSENVVDLTENDKPGFLVTQIL 1430
              :...:||.|.|:|.:|....|.|.|:..|   .|||.|...::.:...||...:.|..|:|:.
  Rat   672 STYTFQLKAVDGGVPPRSAYVGVTINVLDEN---DNAPFITAPSNTSHRLLTPQTRLGETVSQVT 733

  Fly  1431 AVDDD---NDQLWYNISNGNDDNTFYIGQDNGNILLSKYLDYETQQSYNLTISVTDGTFTAFTNL 1492
            |.|.|   |.:|.|:|:.||....|.||..:|.|.|.|.::......:.|.:.|:|         
  Rat   734 AEDIDSGINAELTYSIAGGNPYGLFQIGSHSGAITLEKEIERRHHGLHRLVVKVSD--------- 789

  Fly  1493 LVQVIDINDNPPQFAKDVYHVNISENIEEESVI--MQLHATDRDEDKKLFYHLHATQDPS----- 1550
                   ...||::...:.|:.::|.:...:::  :.:|:.|...|      :....||.     
  Rat   790 -------RGKPPRYGTALVHLYVNETLANRTLLETLLVHSLDTPLD------IDIAGDPEYERSK 841

  Fly  1551 --SLALFRIDSISGNVIVTQRLDFEKTAQHILIVFVKDQGA-----PGKRNYAKIIVNVHDHNDH 1608
              ...||.:  ::|.|.|...:     |..:|:.:.:.:.|     .||:.              
  Rat   842 QRGNILFGV--VAGVVAVALLI-----ALAVLVRYCRQREAKSGYQAGKKE-------------- 885

  Fly  1609 HPEFTAKIIQSKVPESAAIGSKL--------AEVRAI--DRDSGHNAEIQYSIITGNVGSVFEID 1663
                |..:...|....||.|||.        ..|:.:  :.|:|....:::::::...|....|.
  Rat   886 ----TKDLYAPKPSGKAAKGSKSKGKKSKSPKPVKPVEDEDDTGLQKSLKFNLMSDAPGDSPRIH 946

  Fly  1664 PTFGIITLAGNLNINKIQEYMLQVKAVDLGNPPLSSQIPVHIIVTMSENDP-------PKFPTNN 1721
                                      :.|..||.|..:..|    ...|.|       |:.|:.:
  Rat   947 --------------------------LPLNYPPGSPDLGRH----YRSNSPLPSIQLQPQSPSAS 981

  Fly  1722 IAIEIFENL-PIGTFVTQVTARSSSSIFFNIISGNINESFRINP 1764
            ...::.::| |..|||......|:.|..::      :.|:|.||
  Rat   982 KKHQVVQDLPPANTFVGTGDTTSTGSEQYS------DYSYRTNP 1019

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kugNP_001027138.2 Cadherin_repeat 66..178 CDD:206637
Cadherin_repeat 187..285 CDD:206637
Cadherin_repeat 404..503 CDD:206637
Cadherin_repeat 513..609 CDD:206637
Cadherin_repeat 622..708 CDD:206637 2/4 (50%)
Cadherin_repeat 776..873 CDD:206637 35/103 (34%)
Cadherin_repeat 883..976 CDD:206637 31/96 (32%)
Cadherin_repeat 984..1082 CDD:206637 28/112 (25%)
Cadherin_repeat 1092..1189 CDD:206637 13/96 (14%)
Cadherin_repeat 1197..1295 CDD:206637 23/97 (24%)
Cadherin_repeat 1303..1386 CDD:206637 23/84 (27%)
Cadherin_repeat 1413..1502 CDD:206637 24/91 (26%)
Cadherin_repeat 1510..1608 CDD:206637 17/111 (15%)
Cadherin_repeat 1621..1713 CDD:206637 15/101 (15%)
Cadherin_repeat 1724..1811 CDD:206637 11/42 (26%)
Cadherin_repeat 1819..1927 CDD:206637
Cadherin_repeat 1948..2030 CDD:206637
Cadherin_repeat 2037..2136 CDD:206637
Cadherin_repeat 2144..2235 CDD:206637
Cadherin_repeat 2246..2336 CDD:206637
Cadherin_repeat 2345..2445 CDD:206637
Cadherin_repeat 2453..2545 CDD:206637
Cadherin_repeat 2555..>2633 CDD:206637
Cadherin_repeat 2658..2759 CDD:206637
Cadherin_repeat 2774..2856 CDD:206637
Cadherin_repeat 2865..2963 CDD:206637
Cadherin_repeat 2974..3063 CDD:206637
Cadherin_repeat 3072..3165 CDD:206637
Cadherin_repeat 3173..3269 CDD:206637
Cadherin_repeat 3277..3374 CDD:206637
Cadherin_repeat 3383..3479 CDD:206637
Cadherin_repeat 3488..3579 CDD:206637
Cadherin_repeat 3590..3681 CDD:206637
EGF_CA 3866..3903 CDD:238011
Laminin_G_2 3953..4077 CDD:460494
EGF_CA <4121..4150 CDD:238011
EGF_CA 4152..4189 CDD:238011
EGF_CA 4195..4225 CDD:238011
EGF_CA 4227..4262 CDD:214542
Pcdh1XP_038953281.1 Cadherin_2 52..131 CDD:462413 14/54 (26%)
Cadherin_repeat 165..269 CDD:206637 35/103 (34%)
Cadherin_repeat 277..376 CDD:206637 31/98 (32%)
Cadherin_repeat 395..495 CDD:206637 28/109 (26%)
Cadherin_repeat 505..601 CDD:206637 36/200 (18%)
Cadherin_repeat 610..704 CDD:206637 27/98 (28%)
Cadherin_repeat 723..805 CDD:206637 25/97 (26%)
Protocadherin 808..1022 CDD:462451 47/279 (17%)
Blue background indicates that the domain is not in the aligned region.

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