DRSC/TRiP Functional Genomics Resources

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Protein Alignment kug and Pcdh9

DIOPT Version :10

Sequence 1:NP_001027138.2 Gene:kug / 40191 FlyBaseID:FBgn0261574 Length:4699 Species:Drosophila melanogaster
Sequence 2:NP_001178617.1 Gene:Pcdh9 / 306091 RGDID:1306348 Length:1237 Species:Rattus norvegicus


Alignment Length:1070 Identity:293/1070 - (27%)
Similarity:451/1070 - (42%) Gaps:210/1070 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   770 PEFV---NFPQELSINESVQLGETVAWIEAKDRDLGYNGKLVFAI--SDGDYDSVFRIDPDRGEL 829
            ||.|   |.|::|:|:.          |.|.   .|.:..||:.:  ..||...| ::....||:
  Rat    35 PENVPIGNIPKDLNISH----------INAA---TGTSASLVYRLVSKAGDAPLV-KVSSSTGEI 85

  Fly   830 -QIIGYLDRER---------QNEYVLNITVYDLGNPTKSTSKMLPITILDVNDNRPVIQKTLATF 884
             .....:|||:         :||....:.|..|.|......| :.|.:.|.|||.|:....:...
  Rat    86 FTTSNRIDREKLCAGASYAEENECFFELEVVILPNDFFRLIK-IKIIVKDTNDNAPMFPSPVINI 149

  Fly   885 RLTESARIGTVVHCLHATDADSGINAQVTYALSVECSDF---TVNATTG----CLRLNKPLDREK 942
            .:.|:..|.:......|||.|:|.|....|.|....|.|   .|....|    .|.:.:.||||:
  Rat   150 SIPENTLINSRFPIPSATDPDTGFNGVQHYELLNGQSVFGLDIVETPEGEKWPQLIVQQNLDREQ 214

  Fly   943 QDNYALHITAKDGGSPVLSSEALVYVLVDDVNDNAPVFGVQEYIFKVREDLPRGTVLAVIEAVDE 1007
            :|.|.:.|..:|||:|..||.|::.|.|.|||||.|||...:....:.|:.|.||.:..:.|.|.
  Rat   215 KDTYVMKIKVEDGGTPQKSSTAILQVTVSDVNDNRPVFKEGQVEVHIPENAPVGTSVIQLHATDA 279

  Fly  1008 DIGPNAEIQ--FSLKEETQDEELFRIDKHTGAIRTQGYLDYENKQVHNLIVSAIDGGDPSLTSDM 1070
            |||.||||:  |..:.....:.||.::..||.|..|..||.|...:|.:.|.|.||.  |..:..
  Rat   280 DIGSNAEIRYIFGAQVAPATKRLFALNNTTGLITVQRSLDREETAIHKVTVLASDGS--STPARA 342

  Fly  1071 SIVIMIIDVNENRFAPEFD---------DFVYEGKVKENKPKGTFVMNVTARDMDTVDLNSKITY 1126
            ::.|.:.|||:|  .|..|         ..||   :.|..|..|.:..:|..|.|| |:|.|:..
  Rat   343 TVTINVTDVNDN--PPNIDLRYIISPINGTVY---LSEKDPVNTKIALITVSDKDT-DVNGKVIC 401

  Fly  1127 SITGGDGLGIFAVND-QGSITSLSQLDAE-TKNFYWLTLCAQDCAIVPLSNCVEVYIQVENENDN 1189
            .|.......:.||.| |..:.:.|.||.| ||.|.: .:.|.|.....|:....|.:::|:||||
  Rat   402 FIEREVPFHLKAVYDNQYLLETSSLLDYEGTKEFSF-KIVASDSGKPSLNQTALVRVKLEDENDN 465

  Fly  1190 IPLTDKPVYYVNVTEASVENVEIITLKAFDPDIDPTQTITYNIVSGNLVGYFEIDSKTGVIKTTE 1254
            .|:.::||..::|:|.:...:.:.|:.|.|.|......|.|.:  |....:|::|.||||: |..
  Rat   466 PPIFNQPVIELSVSENNRRGLYLTTISATDEDSGKNADIVYQL--GPNASFFDLDRKTGVL-TAS 527

  Fly  1255 RKLDRENQAEHILEVAISDNGSPVLSSTSRIVVSVLDINDNSPEFDQRVYKVQVPSSATVNQSIF 1319
            |..:||.|...|..|...|||:|.|.|.:.::|:|||.|||||:|....::..|..:.....::.
  Rat   528 RVFNREEQERFIFTVTARDNGTPPLQSQAAVIVTVLDENDNSPKFTHNHFQFFVSENLPKYSTVG 592

  Fly  1320 QVHAIDSDSGENGRITYSIKSGKGKNKFRIDSQRGHI--HIAKPLDSDNEFEIHIKAEDNGIPKK 1382
            .:...|.|:|||..:|.||.:  ....|.:|...|.|  :::...:..:.:...:||.|.|.|.:
  Rat   593 VITVTDEDAGENKAVTLSILN--DNENFVLDPYSGVIKSNVSFDREQQSSYTFDVKATDGGQPPR 655

  Fly  1383 SQTARVNIVVVPVNPNSQNAPLIV---RKTSENVVDLTENDKPGFLVTQILAVDDD---NDQLWY 1441
            |.||:|.|.|:.||.||   |:::   ..||..:|.|:.  .||.:|.::.|||.|   |.:|.|
  Rat   656 SSTAKVTINVMDVNDNS---PVVISPPSNTSFKLVPLSA--IPGSVVAEVFAVDIDTGMNAELKY 715

  Fly  1442 NISNGNDDNTFYIGQDNGNILLSKYLDYETQQSYNLTISVTD-GTFTAFTNLLVQVIDINDNPPQ 1505
            .|.:||:...|.|....|||.|.:.........:.|.::::| |...|...|::..:.:||....
  Rat   716 TIVSGNNKGLFRIDPVTGNITLEEKPAPTDVGLHRLVVNISDLGYPKALHTLVLVFLYVNDTAGN 780

  Fly  1506 FAKDVYHVNISENIEEESVIMQLHATDRDE---DKKLFYHLHATQDPSSLALFRIDSISGNVIVT 1567
             |..:|           .:|.:...|..|.   |....|     |:...|.:. |..::|.::| 
  Rat   781 -ASYIY-----------DLIRRTMETPLDRNIGDSGQPY-----QNEDYLTIM-IAIVAGAMVV- 826

  Fly  1568 QRLDFEKTAQHILIVFV-----------------KDQGA-------PGKRNYAKIIVNVHDHNDH 1608
                       |:::||                 ..|||       ..|:|..|           
  Rat   827 -----------IVVIFVTVLVRCRHASRFKAAQRSKQGAEWMSPNQENKQNKKK----------- 869

  Fly  1609 HPEFTAKIIQSKVPESAAIGSKLAEVRAIDRDSGHNAEIQYSIITGNVGSVFEIDPTFGIITLAG 1673
                  |..:.|.|:|:.:.....|....| |:.|                   :|..|.|:|..
  Rat   870 ------KRKKRKSPKSSLLNFVTIEESKPD-DAVH-------------------EPINGTISLPA 908

  Fly  1674 NLNINKIQEYMLQVKAVDLGNPPLSSQIPVHIIVTMSENDP------------PKF---PTNNIA 1723
            .|....|..:       |.|..|.:         |...|.|            |.|   |...::
  Rat   909 ELEEQSIGRF-------DWGPAPPT---------TFKPNSPDLAKHYKSASPQPAFHLKPDTPVS 957

  Fly  1724 IE---IFENLPI-GTFV---TQVTARSSSS 1746
            ::   :.:.||: .|||   ..::.|||:|
  Rat   958 VKKHHVIQELPLDNTFVGGCDTLSKRSSTS 987

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kugNP_001027138.2 Cadherin_repeat 66..178 CDD:206637
Cadherin_repeat 187..285 CDD:206637
Cadherin_repeat 404..503 CDD:206637
Cadherin_repeat 513..609 CDD:206637
Cadherin_repeat 622..708 CDD:206637
Cadherin_repeat 776..873 CDD:206637 25/108 (23%)
Cadherin_repeat 883..976 CDD:206637 34/99 (34%)
Cadherin_repeat 984..1082 CDD:206637 33/99 (33%)
Cadherin_repeat 1092..1189 CDD:206637 31/98 (32%)
Cadherin_repeat 1197..1295 CDD:206637 34/97 (35%)
Cadherin_repeat 1303..1386 CDD:206637 19/84 (23%)
Cadherin_repeat 1413..1502 CDD:206637 27/92 (29%)
Cadherin_repeat 1510..1608 CDD:206637 20/124 (16%)
Cadherin_repeat 1621..1713 CDD:206637 16/91 (18%)
Cadherin_repeat 1724..1811 CDD:206637 9/30 (30%)
Cadherin_repeat 1819..1927 CDD:206637
Cadherin_repeat 1948..2030 CDD:206637
Cadherin_repeat 2037..2136 CDD:206637
Cadherin_repeat 2144..2235 CDD:206637
Cadherin_repeat 2246..2336 CDD:206637
Cadherin_repeat 2345..2445 CDD:206637
Cadherin_repeat 2453..2545 CDD:206637
Cadherin_repeat 2555..>2633 CDD:206637
Cadherin_repeat 2658..2759 CDD:206637
Cadherin_repeat 2774..2856 CDD:206637
Cadherin_repeat 2865..2963 CDD:206637
Cadherin_repeat 2974..3063 CDD:206637
Cadherin_repeat 3072..3165 CDD:206637
Cadherin_repeat 3173..3269 CDD:206637
Cadherin_repeat 3277..3374 CDD:206637
Cadherin_repeat 3383..3479 CDD:206637
Cadherin_repeat 3488..3579 CDD:206637
Cadherin_repeat 3590..3681 CDD:206637
EGF_CA 3866..3903 CDD:238011
Laminin_G_2 3953..4077 CDD:460494
EGF_CA <4121..4150 CDD:238011
EGF_CA 4152..4189 CDD:238011
EGF_CA 4195..4225 CDD:238011
EGF_CA 4227..4262 CDD:214542
Pcdh9NP_001178617.1 Cadherin_repeat 29..138 CDD:206637 29/117 (25%)
Cadherin_repeat 146..248 CDD:206637 34/101 (34%)
Cadherin_repeat 258..354 CDD:206637 33/97 (34%)
Cadherin_repeat 370..465 CDD:206637 31/99 (31%)
Cadherin_repeat 473..568 CDD:206637 34/97 (35%)
Cadherin_repeat 576..671 CDD:206637 26/96 (27%)
Cadherin_repeat 687..776 CDD:206637 26/90 (29%)
Protocadherin 777..1000 CDD:462451 53/294 (18%)
Blue background indicates that the domain is not in the aligned region.

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