DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment kug and Pcdhb7

DIOPT Version :10

Sequence 1:NP_001027138.2 Gene:kug / 40191 FlyBaseID:FBgn0261574 Length:4699 Species:Drosophila melanogaster
Sequence 2:NP_001395766.1 Gene:Pcdhb7 / 291652 RGDID:1309422 Length:798 Species:Rattus norvegicus


Alignment Length:812 Identity:218/812 - (26%)
Similarity:335/812 - (41%) Gaps:168/812 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   778 ELSINESVQLGETVAWIEAKDRDLGYNGKLVF----AISDGDYDSVFRIDPDRGELQIIGYLDRE 838
            :.||.|..:.|..||.: |||..|| .|:|..    .:|| ||.....:||:.|:|.:...||||
  Rat    32 QYSILEETESGSFVAHL-AKDLGLG-AGELAARSARVVSD-DYKQRLLLDPETGDLILREKLDRE 93

  Fly   839 R----QNEYVLNITVYDLGNPTKSTSKMLPITILDVNDNRPVIQKTLATFRLTESARIGTVVHCL 899
            .    .:..||...| .|..|.:.....|  .|.|:||:.|...:.....::.|:::.||::...
  Rat    94 ELCGFVDPCVLPFQV-SLEKPVQYFQGEL--LIQDINDHAPEFPEGEILLKIPENSQPGTLLPLN 155

  Fly   900 HATDADSGINA--QVTYALSVECSDFTVNATTGC----LRLNKPLDREKQDNYALHITAKDGGSP 958
            .|.|.|.|.|.  |.|.:.:......|.|.:.|.    |..::.||||:|...:|.:.|.|||||
  Rat   156 LAQDLDVGSNGLQQYTVSTNPHFHVLTRNNSEGKKYPELVQDRALDREEQAELSLTLMALDGGSP 220

  Fly   959 VLSSEALVYVLVDDVNDNAPVFGVQEYIFKVREDLPRGTVLAVIEAVDEDIGPNAEIQFSLKEET 1023
            ..|..|||.:|:.|:|||||.|....|..:|.|..|..:.:..:.|.|.|.|....:.:.|.:.:
  Rat   221 PRSGTALVQILIMDINDNAPEFVNSPYEVQVPESCPPDSPILTVLAWDADAGNFGSVSYGLFQAS 285

  Fly  1024 QD-EELFRIDKHTGAIRTQGYLDYENKQVHNLIVSAIDGGDPSLTSDMSIVIMIIDVNENRFAPE 1087
            .: ::.|.|:|.||.||.:..||:|..:.:::.:.|.|||  .|:...|::|.::|||:|  |||
  Rat   286 DEIKKTFSINKVTGEIRLKKELDFEKIKSYHVKIEATDGG--GLSGRGSVMIEVLDVNDN--APE 346

  Fly  1088 FDDFVYEGKVKENKPKGTFVMNVTARDMDTVDLNSKITYSITGGDGLGIFAVNDQGSITSLSQLD 1152
            .........|.||.|: |.:......|.|:.: |.|:..||                        
  Rat   347 LTISSLTSSVPENAPE-TIISIFRVGDRDSGE-NGKVVCSI------------------------ 385

  Fly  1153 AETKNFYWLTLCAQDCAIVPLSNCVEVYIQVENENDNIPLTDKPVYYVNVTEASVENVEIITLKA 1217
                                              ::|:|...|.                 |.|.
  Rat   386 ----------------------------------SENLPFLLKS-----------------TFKN 399

  Fly  1218 FDPDIDPTQTITYNIVSGNLVGYFEIDSKTGVIKTTERKLDRENQAEHILEVAISDNGSPVLSST 1282
            |           |.:|                   ||..||||::||:.:.:.:||.|:|.|::.
  Rat   400 F-----------YTLV-------------------TESPLDRESRAEYNITITVSDLGTPRLTTQ 434

  Fly  1283 SRIVVSVLDINDNSPEFDQRVYKVQVPSSATVNQSIFQVHAIDSDSGENGRITYSIKSGKG---- 1343
            ..|.|.|.|||||:|.|.|..|.:.|..:.:....|..:.|.|||||.|..||||:...:.    
  Rat   435 HTITVQVSDINDNAPAFTQTSYTMFVHENNSPALHIGTISATDSDSGSNAHITYSLLPPQNPQLA 499

  Fly  1344 -KNKFRIDSQRGHIHIAKPLDSD--NEFEIHIKAEDNGIPKKSQTARVNIVVVPVNPNSQNAPLI 1405
             .:...|:...|.:...:.||.:  ..||.|:.|.|.|.|..|..|.|.:||:..|   .|||.:
  Rat   500 LTSLISINPDNGQLFALRALDYEAVQAFEFHVGASDGGSPALSSQALVRVVVLDDN---DNAPFV 561

  Fly  1406 VRKTSENVVDLTE----NDKPGFLVTQILAVDDDNDQ---LWYNISNGNDDNTFYIGQDNGNILL 1463
            :..........||    ..:||:|||:::|||.|:.|   |.:.:....:...|.:...||.:..
  Rat   562 LYPLQNASAPFTELLPRAAEPGYLVTKVVAVDADSGQNAWLSFQLLKATEPGLFIVWGHNGEVRT 626

  Fly  1464 SKYLDYETQQSYNLTISVTDGTFTAFTNLLVQVIDINDNPPQFAKDVYHVNISENIEEESVIMQL 1528
            ::.|.......:.|.:.|.|                |.:||:.......|.:.:...:..:.:..
  Rat   627 TRMLSERDVPKHRLLLLVKD----------------NGDPPRSVSVTLLVLLVDGFSQPYISLPE 675

  Fly  1529 HATD---RDEDKKLFYHLHATQDPSSLALFRI 1557
            .|.|   :.||....|.:.|....|||.|..:
  Rat   676 VAPDPAQKVEDALTVYLIIALASVSSLFLLSV 707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kugNP_001027138.2 Cadherin_repeat 66..178 CDD:206637
Cadherin_repeat 187..285 CDD:206637
Cadherin_repeat 404..503 CDD:206637
Cadherin_repeat 513..609 CDD:206637
Cadherin_repeat 622..708 CDD:206637
Cadherin_repeat 776..873 CDD:206637 34/102 (33%)
Cadherin_repeat 883..976 CDD:206637 33/98 (34%)
Cadherin_repeat 984..1082 CDD:206637 29/98 (30%)
Cadherin_repeat 1092..1189 CDD:206637 11/96 (11%)
Cadherin_repeat 1197..1295 CDD:206637 24/97 (25%)
Cadherin_repeat 1303..1386 CDD:206637 26/89 (29%)
Cadherin_repeat 1413..1502 CDD:206637 21/95 (22%)
Cadherin_repeat 1510..1608 CDD:206637 11/51 (22%)
Cadherin_repeat 1621..1713 CDD:206637
Cadherin_repeat 1724..1811 CDD:206637
Cadherin_repeat 1819..1927 CDD:206637
Cadherin_repeat 1948..2030 CDD:206637
Cadherin_repeat 2037..2136 CDD:206637
Cadherin_repeat 2144..2235 CDD:206637
Cadherin_repeat 2246..2336 CDD:206637
Cadherin_repeat 2345..2445 CDD:206637
Cadherin_repeat 2453..2545 CDD:206637
Cadherin_repeat 2555..>2633 CDD:206637
Cadherin_repeat 2658..2759 CDD:206637
Cadherin_repeat 2774..2856 CDD:206637
Cadherin_repeat 2865..2963 CDD:206637
Cadherin_repeat 2974..3063 CDD:206637
Cadherin_repeat 3072..3165 CDD:206637
Cadherin_repeat 3173..3269 CDD:206637
Cadherin_repeat 3277..3374 CDD:206637
Cadherin_repeat 3383..3479 CDD:206637
Cadherin_repeat 3488..3579 CDD:206637
Cadherin_repeat 3590..3681 CDD:206637
EGF_CA 3866..3903 CDD:238011
Laminin_G_2 3953..4077 CDD:460494
EGF_CA <4121..4150 CDD:238011
EGF_CA 4152..4189 CDD:238011
EGF_CA 4195..4225 CDD:238011
EGF_CA 4227..4262 CDD:214542
Pcdhb7NP_001395766.1 Cadherin_2 32..112 CDD:462413 29/83 (35%)
Cadherin_repeat 140..238 CDD:206637 33/97 (34%)
Cadherin_repeat 246..343 CDD:206637 29/98 (30%)
Cadherin_repeat 355..447 CDD:206637 38/198 (19%)
Cadherin_repeat 455..557 CDD:206637 31/104 (30%)
Cadherin_repeat 571..652 CDD:206637 22/96 (23%)
Cadherin_C_2 688..770 CDD:465139 6/20 (30%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.