DRSC/TRiP Functional Genomics Resources

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Protein Alignment kug and Pcdhb12

DIOPT Version :10

Sequence 1:NP_001027138.2 Gene:kug / 40191 FlyBaseID:FBgn0261574 Length:4699 Species:Drosophila melanogaster
Sequence 2:NP_775122.2 Gene:Pcdhb12 / 25133 RGDID:3266 Length:797 Species:Rattus norvegicus


Alignment Length:845 Identity:215/845 - (25%)
Similarity:331/845 - (39%) Gaps:196/845 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   746 KSASPSVFSDLSLTPSRYGQNVHRPEFVNFPQE-----LSINESVQLGETVAWIEAKDRDLGYNG 805
            ||:|.::         ||          :.|:|     :..|.:..||..|..:.::...:.|.|
  Rat    25 KSSSEAI---------RY----------SMPEETESGYMVANLAKDLGIRVGELSSRGAQIHYKG 70

  Fly   806 KLVFAISDGDYDSVFRIDPDRGELQIIGYLDRE----RQNEYVLNITVYDLGNPTKSTSKMLPIT 866
            .          ..:.::|.:.|.|.:...||||    .....|||..:. |.||.:.....|.:|
  Rat    71 N----------KELLQLDAETGNLFLKEKLDRELLCGETEPCVLNFQII-LENPMQFFQTELQLT 124

  Fly   867 ILDVNDNRPVIQKTLATFRLTESARIGTVVHCLHATDADSGINAQVTYAL--SVECSDFTVNATT 929
              |:||:.|..........:.|||..|||.....|.|:|.|.||...|.:  ::.....|.:.|.
  Rat   125 --DINDHSPEFPNKKMLLTIPESAHPGTVFPLKAAQDSDIGSNAVQNYTVNPNLHFHVVTHSRTD 187

  Fly   930 GC----LRLNKPLDREKQDNYALHITAKDGGSPVLSSEALVYVLVDDVNDNAPVFGVQEYIFKVR 990
            |.    |.:::.||||:|....|.:||.|||:|..|....|::.|.|:|||:|.|....|..:|.
  Rat   188 GRKYPELVVDRALDREEQPELTLILTALDGGTPRRSGTTTVHIEVVDINDNSPQFVQSLYKVQVP 252

  Fly   991 EDLPRGTVLAVIEAVDEDIGPNAEIQFSLKEETQDEELFRIDKHTGAIRTQGYLDYENKQVHNLI 1055
            |:.|....:..:.|.|.|.|....:.:||.:.....:.|.||:.||.|.....||:|....||:.
  Rat   253 ENNPLNAFVVTVSATDLDAGVYGNVTYSLFQGYGVFQPFVIDEITGEIHLSKELDFEEISNHNIE 317

  Fly  1056 VSAIDGGDPSLTSDMSIVIMIIDVNENRFAPEFDDFVYEGKVKENKPKGTFVMNVTARDMDTVDL 1120
            ::|.|||  .|:...::.:.::|||:|  |||.........|.||..: |.|...:..|.|:.| 
  Rat   318 IAATDGG--GLSGKCTVAVQVLDVNDN--APELTIRKLTVLVPENSAE-TVVAVFSVSDSDSGD- 376

  Fly  1121 NSKITYSITGGDGLGIFAVNDQGSITSLSQLDAETKNFYWLTLCAQDCAIVPLSNCVEVYIQVEN 1185
            |.::..||.                                                        
  Rat   377 NGRMVCSIP-------------------------------------------------------- 385

  Fly  1186 ENDNIPLTDKPVYYVNVTEASVENVEIITLKAFDPDIDPTQTITYNIVSGNLVGYFEIDSKTGVI 1250
              :|||...||.:         ||.                   |.:|                 
  Rat   386 --NNIPFLLKPTF---------ENY-------------------YTLV----------------- 403

  Fly  1251 KTTERKLDRENQAEHILEVAISDNGSPVLSSTSRIVVSVLDINDNSPEFDQRVYKVQVPSSATVN 1315
              ||..|||||:||:.:.:.:||.|:|.|::...|.|.|.|||||:|.|.|..|.:.|..:.:..
  Rat   404 --TEGPLDRENRAEYNITITVSDLGTPRLTTQHTITVQVSDINDNAPAFTQTSYTMFVHENNSPA 466

  Fly  1316 QSIFQVHAIDSDSGENGRITYSIKSGKGKNKFRIDS------QRGHIHIAKPLDSD--NEFEIHI 1372
            ..|..:.|.|||||.|..||||:.. ....:..:||      ..|.:...:.||.:  ..||.::
  Rat   467 LHIGTISATDSDSGSNAHITYSLLP-PDDPQLALDSLISINVDNGQLFALRALDYEALQSFEFYV 530

  Fly  1373 KAEDNGIPKKSQTARVNIVVVPVNPNSQNAPLIVRKTSENVVDLTE----NDKPGFLVTQILAVD 1433
            .|.|.|.|..|....|.:||:..|   .|||.::..........||    ..:||:|:|:::|||
  Rat   531 GATDGGSPALSSQTLVRMVVLDDN---DNAPFVLYPLQNASAPCTELLPRAAEPGYLITKVVAVD 592

  Fly  1434 DDNDQ---LWYNISNGNDDNTFYIGQDNGNILLSKYLDYETQQSYNLTISVTDGTFTAFTNLLVQ 1495
            .|:.|   |.:.:....:...|.:...||.:..::.|.....|.:.|.:.|.|            
  Rat   593 RDSGQNAWLSFQLLKATEPGLFSVWAHNGEVRTTRLLSERDAQKHKLLLLVKD------------ 645

  Fly  1496 VIDINDNPPQFAKDVYHVNISENIEEESVIMQLHATDRDEDK---KLFYHLHATQDPSSLALFRI 1557
                |.:|.:.|....||.:.:...:..:.:...|.|..:|.   ...|.:.|....|||.|..:
  Rat   646 ----NGDPLRSANVTLHVLVVDGFSQPYLPLAEVAQDSMQDNYDVLTLYLVIALASVSSLFLLSV 706

  Fly  1558  1557
              Rat   707  706

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kugNP_001027138.2 Cadherin_repeat 66..178 CDD:206637
Cadherin_repeat 187..285 CDD:206637
Cadherin_repeat 404..503 CDD:206637
Cadherin_repeat 513..609 CDD:206637
Cadherin_repeat 622..708 CDD:206637
Cadherin_repeat 776..873 CDD:206637 25/105 (24%)
Cadherin_repeat 883..976 CDD:206637 34/98 (35%)
Cadherin_repeat 984..1082 CDD:206637 29/97 (30%)
Cadherin_repeat 1092..1189 CDD:206637 11/96 (11%)
Cadherin_repeat 1197..1295 CDD:206637 24/97 (25%)
Cadherin_repeat 1303..1386 CDD:206637 26/90 (29%)
Cadherin_repeat 1413..1502 CDD:206637 21/95 (22%)
Cadherin_repeat 1510..1608 CDD:206637 11/51 (22%)
Cadherin_repeat 1621..1713 CDD:206637
Cadherin_repeat 1724..1811 CDD:206637
Cadherin_repeat 1819..1927 CDD:206637
Cadherin_repeat 1948..2030 CDD:206637
Cadherin_repeat 2037..2136 CDD:206637
Cadherin_repeat 2144..2235 CDD:206637
Cadherin_repeat 2246..2336 CDD:206637
Cadherin_repeat 2345..2445 CDD:206637
Cadherin_repeat 2453..2545 CDD:206637
Cadherin_repeat 2555..>2633 CDD:206637
Cadherin_repeat 2658..2759 CDD:206637
Cadherin_repeat 2774..2856 CDD:206637
Cadherin_repeat 2865..2963 CDD:206637
Cadherin_repeat 2974..3063 CDD:206637
Cadherin_repeat 3072..3165 CDD:206637
Cadherin_repeat 3173..3269 CDD:206637
Cadherin_repeat 3277..3374 CDD:206637
Cadherin_repeat 3383..3479 CDD:206637
Cadherin_repeat 3488..3579 CDD:206637
Cadherin_repeat 3590..3681 CDD:206637
EGF_CA 3866..3903 CDD:238011
Laminin_G_2 3953..4077 CDD:460494
EGF_CA <4121..4150 CDD:238011
EGF_CA 4152..4189 CDD:238011
EGF_CA 4195..4225 CDD:238011
EGF_CA 4227..4262 CDD:214542
Pcdhb12NP_775122.2 Cadherin_2 30..112 CDD:462413 21/111 (19%)
Cadherin_repeat 140..238 CDD:206637 34/97 (35%)
Cadherin_repeat 247..342 CDD:206637 29/96 (30%)
Cadherin_repeat 352..446 CDD:206637 40/200 (20%)
Cadherin_repeat 454..556 CDD:206637 30/105 (29%)
Cadherin_repeat 575..663 CDD:206637 23/103 (22%)
Cadherin_C_2 687..769 CDD:465139 6/20 (30%)
Blue background indicates that the domain is not in the aligned region.

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