DRSC/TRiP Functional Genomics Resources

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Protein Alignment kug and Pcdh12

DIOPT Version :10

Sequence 1:NP_001027138.2 Gene:kug / 40191 FlyBaseID:FBgn0261574 Length:4699 Species:Drosophila melanogaster
Sequence 2:NP_446396.1 Gene:Pcdh12 / 116808 RGDID:619917 Length:1179 Species:Rattus norvegicus


Alignment Length:804 Identity:228/804 - (28%)
Similarity:342/804 - (42%) Gaps:162/804 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   704 LMPEDLG--GDSSILHGFGSFECRETGVARRLAETLSLAEKNNVKSASPS--VFSDLSLTP---S 761
            |:|..||  |..|.|  |.|..|:|..         ::..|..|....||  |...||..|   .
  Rat     3 LLPFLLGLLGPGSYL--FISGACQEVA---------TVTVKFQVAEEVPSGTVIGKLSQEPGVEE 56

  Fly   762 RYGQNVHRPEFVNFPQELSINESVQLGETVAWIEAKDRDLGYNGKLVFAISDGDYDSVFRIDPDR 826
            |.|:.....:.:..||.|.|                                       :::.:.
  Rat    57 RRGKAGDAFQILQLPQALPI---------------------------------------QMNSED 82

  Fly   827 GELQIIGYLDRER----QNEYVLNITVYDLGNPTKSTSKMLPITILDVNDNRPVIQKTLATFRLT 887
            |.|.....||||:    |:..:::..|...|   .|....:.|.:||:||::|...|......::
  Rat    83 GLLNTSSRLDREKLCRQQDPCLVSFDVLATG---ASALIHVEIQVLDINDHQPQFPKDEQELEIS 144

  Fly   888 ESARIGTVVHCLHATDADSGINAQVTYALSVECSDFTVNATTGC-------LRLNKPLDREKQDN 945
            |||.:.|.:....|.|.|:|.|:..:|:|| ....|.::...|.       |.:.|.||||....
  Rat   145 ESASLHTRIPLDRALDQDTGPNSLYSYSLS-PSEHFALDVIVGPDETKHAELVVVKELDREVHSY 208

  Fly   946 YALHITAKDGGSPVLSSEALVYVLVDDVNDNAPVFGVQEYIFKVREDLPRGTVLAVIEAVDEDIG 1010
            :.|.:||.|.|:|..|..::|.|.|.|.|||:|||.......::.||...||:|..:.|.|.|.|
  Rat   209 FDLVLTAYDNGNPPKSGTSVVKVNVLDSNDNSPVFAESSLALEIPEDTAPGTLLINLTATDPDQG 273

  Fly  1011 PNAEIQFSLKEETQDEEL--FRIDKHTGAIRTQGYLDYENKQVHNLIVSAIDGGDPSLTSDMSIV 1073
            ||.|::|...:....|.:  |.||..||.|.....||||....:.:.|.|.|.|..|:.....::
  Rat   274 PNGEVEFFFGKHVSPEVMNTFGIDAKTGQIVLLQPLDYEKNPAYEVDVQARDLGPNSIPGHCKVL 338

  Fly  1074 IMIIDVNENRFAPEFDDFVYEGK---VKENKPKGTFVMNVTARDMDTVDLNSKITYSITGGDG-- 1133
            |.::|||:|  ||.. ...:..:   |.|:.|:.:|:..|:|.|:|            :|.:|  
  Rat   339 IKVLDVNDN--APSI-HITWASQMSLVSEDLPRDSFIALVSANDLD------------SGNNGLV 388

  Fly  1134 -------LGIFAV-----NDQGSITSLSQLDAETKNFYWLTLCAQDCAIVPLSNCVEVYIQVENE 1186
                   ||.|.:     |....:|| :.||.|....|.||:.|||.....||...|:.|||.:.
  Rat   389 NCWLNQELGHFRLKRTNGNTYMLLTS-AMLDREQWPTYTLTVFAQDQGPQALSAEKELQIQVSDV 452

  Fly  1187 NDNIPLTDKPVYYVNVTEASVENVEIITLKAFDPDIDPTQTITYNIVSGNLVGYFEIDSKTGVIK 1251
            |||.|:.:|..|.|:..|.:..::.:|||||.|.|:.....::|.|....:.....|||:||.: 
  Rat   453 NDNAPVFEKSRYEVSTWENNPPSLHLITLKAHDADLGSNGKVSYRIKDSPVSHLVIIDSETGEV- 516

  Fly  1252 TTERKLDRENQAEHILEVAISDNGSPVLSSTSRIVVSVLDINDNSPEFDQ-RVYKVQVPSSATVN 1315
            |.:|.||.|..|....:|...|.|.|.|||:..:.||:||.|||:||..| .:.:.:...|..||
  Rat   517 TAQRSLDYEEMAGFEFQVIAEDRGQPQLSSSISVWVSLLDANDNTPEVIQPALSEGKATLSVLVN 581

  Fly  1316 QS----------------------------------IFQVHAIDSDSGENGRITYSIKSGKGKNK 1346
            .|                                  :..:.|.|:|||.||.:.|||:||...:.
  Rat   582 ASTGHLLLPIESPSGMDPAGTGPTPPKATHSPWSFLLVTIVARDADSGANGELLYSIQSGNDAHL 646

  Fly  1347 FRIDSQRGHIHIAKPLDSD---NEFEIHIKAEDNGIPKKSQTARVNIVVVPVNPNSQNAPLIVRK 1408
            |.:....|.:.|.....|.   :::::.|..||.|.|  |...:|::.||.|.            
  Rat   647 FVLSPSLGQLFINVTNASSLIGSQWDLGIVVEDQGSP--SLQTQVSLKVVFVT------------ 697

  Fly  1409 TSENVVDLTENDKPGFLVTQILAV 1432
            :.:::.|...  :||.|.|..||:
  Rat   698 SMDHLRDSAH--EPGILSTPALAM 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
kugNP_001027138.2 Cadherin_repeat 66..178 CDD:206637
Cadherin_repeat 187..285 CDD:206637
Cadherin_repeat 404..503 CDD:206637
Cadherin_repeat 513..609 CDD:206637
Cadherin_repeat 622..708 CDD:206637 2/3 (67%)
Cadherin_repeat 776..873 CDD:206637 18/100 (18%)
Cadherin_repeat 883..976 CDD:206637 32/99 (32%)
Cadherin_repeat 984..1082 CDD:206637 33/99 (33%)
Cadherin_repeat 1092..1189 CDD:206637 32/113 (28%)
Cadherin_repeat 1197..1295 CDD:206637 35/97 (36%)
Cadherin_repeat 1303..1386 CDD:206637 26/119 (22%)
Cadherin_repeat 1413..1502 CDD:206637 7/20 (35%)
Cadherin_repeat 1510..1608 CDD:206637
Cadherin_repeat 1621..1713 CDD:206637
Cadherin_repeat 1724..1811 CDD:206637
Cadherin_repeat 1819..1927 CDD:206637
Cadherin_repeat 1948..2030 CDD:206637
Cadherin_repeat 2037..2136 CDD:206637
Cadherin_repeat 2144..2235 CDD:206637
Cadherin_repeat 2246..2336 CDD:206637
Cadherin_repeat 2345..2445 CDD:206637
Cadherin_repeat 2453..2545 CDD:206637
Cadherin_repeat 2555..>2633 CDD:206637
Cadherin_repeat 2658..2759 CDD:206637
Cadherin_repeat 2774..2856 CDD:206637
Cadherin_repeat 2865..2963 CDD:206637
Cadherin_repeat 2974..3063 CDD:206637
Cadherin_repeat 3072..3165 CDD:206637
Cadherin_repeat 3173..3269 CDD:206637
Cadherin_repeat 3277..3374 CDD:206637
Cadherin_repeat 3383..3479 CDD:206637
Cadherin_repeat 3488..3579 CDD:206637
Cadherin_repeat 3590..3681 CDD:206637
EGF_CA 3866..3903 CDD:238011
Laminin_G_2 3953..4077 CDD:460494
EGF_CA <4121..4150 CDD:238011
EGF_CA 4152..4189 CDD:238011
EGF_CA 4195..4225 CDD:238011
EGF_CA 4227..4262 CDD:214542
Pcdh12NP_446396.1 Cadherin_2 30..110 CDD:462413 21/118 (18%)
Cadherin_repeat 138..239 CDD:206637 32/101 (32%)
Cadherin_repeat 250..347 CDD:206637 33/96 (34%)
Cadherin_repeat 362..455 CDD:206637 32/105 (30%)
Cadherin_repeat 464..560 CDD:206637 35/96 (36%)
Cadherin_repeat 617..693 CDD:206637 23/77 (30%)
Blue background indicates that the domain is not in the aligned region.

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