DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nca and vsnl1b

DIOPT Version :9

Sequence 1:NP_788543.1 Gene:Nca / 40186 FlyBaseID:FBgn0013303 Length:190 Species:Drosophila melanogaster
Sequence 2:NP_001314871.1 Gene:vsnl1b / 561162 ZFINID:ZDB-GENE-080225-39 Length:191 Species:Danio rerio


Alignment Length:190 Identity:134/190 - (70%)
Similarity:161/190 - (84%) Gaps:2/190 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGKQNSKLKPEVLEDLKQNTEFTDAEIQEWYKGFLKDCPSGHLSVEEFKKIYGNFFPYGDASKFA 65
            ||||||||.|||:|||.:||||.:.|:::||||||||||||.|::|||:::|..|||||||||||
Zfish     1 MGKQNSKLTPEVMEDLVKNTEFNEHELKQWYKGFLKDCPSGRLNLEEFQQLYVKFFPYGDASKFA 65

  Fly    66 EHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLKWAFSMYDLDGNGYISRQEMLEIVTAIYK 130
            :|.|||||.|.|||||||||:||||:||||..||||.|||:||||||:|.|:|.|||||:.||||
Zfish    66 QHAFRTFDKNSDGTIDFREFICALSITSRGSFEQKLNWAFNMYDLDGDGKITRVEMLEIIEAIYK 130

  Fly   131 MVGSV--MKMPEDESTPEKRTDKIFRQMDRNKDGKLSLEEFIEGAKSDPSIVRLLQCDPQ 188
            |||:|  |||.||..|||:|.|:||.:||:|.|.:::|:||.|.||||||||.|||||.|
Zfish   131 MVGTVIMMKMNEDGLTPEQRVDRIFSKMDKNNDDQITLDEFKEAAKSDPSIVLLLQCDMQ 190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NcaNP_788543.1 FRQ1 13..179 CDD:227455 114/167 (68%)
vsnl1bNP_001314871.1 FRQ1 15..181 CDD:227455 113/165 (68%)
EFh 65..125 CDD:238008 45/59 (76%)
EFh 100..176 CDD:238008 47/75 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 49 1.000 Domainoid score I11797
eggNOG 1 0.900 - - E2759_KOG0044
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53747
OrthoDB 1 1.010 - - D1369072at2759
OrthoFinder 1 1.000 - - FOG0000038
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23055
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X31
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
98.930

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