DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nca and rcvrn.2

DIOPT Version :9

Sequence 1:NP_788543.1 Gene:Nca / 40186 FlyBaseID:FBgn0013303 Length:190 Species:Drosophila melanogaster
Sequence 2:NP_001008164.1 Gene:rcvrn.2 / 493526 XenbaseID:XB-GENE-5807318 Length:193 Species:Xenopus tropicalis


Alignment Length:191 Identity:93/191 - (48%)
Similarity:132/191 - (69%) Gaps:3/191 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGKQNS-KLKPEVLEDLKQNTEFTDAEIQEWYKGFLKDCPSGHLSVEEFKKIYGNFFPYGDASKF 64
            ||...| .|..|||||||.||.::|.|:.:||:.|.|..|:|.::..||:|||.||||..|...:
 Frog     1 MGNTKSGALSKEVLEDLKANTRYSDDELCKWYESFSKQSPNGKITRTEFEKIYANFFPNSDPKSY 65

  Fly    65 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLKWAFSMYDLDGNGYISRQEMLEIVTAIY 129
            |.||||:||.|.|||:||||::.||.:||.||...||:||||::|:|.||.||:.|:|||:|||:
 Frog    66 ARHVFRSFDTNEDGTLDFREYIIALHLTSSGKTSLKLEWAFSLFDVDKNGEISKVEVLEIITAIF 130

  Fly   130 KMV--GSVMKMPEDESTPEKRTDKIFRQMDRNKDGKLSLEEFIEGAKSDPSIVRLLQCDPQ 188
            ||:  .....:.:||:||:||.||::....::.|.|::..|||:|...:..|:||:|.||:
 Frog   131 KMIPPEEQKNLADDENTPQKRADKLWAYFKKSDDAKIAEGEFIQGIMMNDEIMRLIQYDPR 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NcaNP_788543.1 FRQ1 13..179 CDD:227455 81/167 (49%)
rcvrn.2NP_001008164.1 FRQ1 14..177 CDD:227455 81/162 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53747
OrthoDB 1 1.010 - - D495747at33208
OrthoFinder 1 1.000 - - FOG0000038
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23055
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X31
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.030

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