DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nca and rcvrn.1

DIOPT Version :9

Sequence 1:NP_788543.1 Gene:Nca / 40186 FlyBaseID:FBgn0013303 Length:190 Species:Drosophila melanogaster
Sequence 2:XP_002937040.1 Gene:rcvrn.1 / 100302393 XenbaseID:XB-GENE-973335 Length:202 Species:Xenopus tropicalis


Alignment Length:191 Identity:94/191 - (49%)
Similarity:141/191 - (73%) Gaps:3/191 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MG-KQNSKLKPEVLEDLKQNTEFTDAEIQEWYKGFLKDCPSGHLSVEEFKKIYGNFFPYGDASKF 64
            || .::|.|..|:||:|:.||:|:..|:..||:.|||:||:|.:|.::|:.||..|||..|...:
 Frog     1 MGNSKSSALSKEILEELQLNTKFSQEELCTWYQSFLKECPTGRISKQQFEGIYSKFFPDADPKAY 65

  Fly    65 AEHVFRTFDANGDGTIDFREFLCALSVTSRGKLEQKLKWAFSMYDLDGNGYISRQEMLEIVTAIY 129
            |.||||:||:|.|||:||:|::.||.:||.||..|||:||||:||:||||.|::.|:|||:|||:
 Frog    66 ARHVFRSFDSNNDGTLDFKEYMIALHMTSSGKANQKLEWAFSLYDVDGNGTINKSEVLEIITAIF 130

  Fly   130 KMVGS--VMKMPEDESTPEKRTDKIFRQMDRNKDGKLSLEEFIEGAKSDPSIVRLLQCDPQ 188
            ||:.:  ...:||||:|||:||:||:....:..:.||:..|||:|..::..|:||:|.:||
 Frog   131 KMINTEDQKHLPEDENTPERRTNKIWDFFGKKDNDKLTEGEFIQGIMNNKEILRLIQFEPQ 191

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NcaNP_788543.1 FRQ1 13..179 CDD:227455 83/167 (50%)
rcvrn.1XP_002937040.1 FRQ1 14..182 CDD:227455 83/167 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53747
OrthoDB 1 1.010 - - D495747at33208
OrthoFinder 1 1.000 - - FOG0000038
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR23055
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X31
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.030

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