DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prp3 and Prpf3

DIOPT Version :9

Sequence 1:NP_649156.1 Gene:Prp3 / 40172 FlyBaseID:FBgn0036915 Length:598 Species:Drosophila melanogaster
Sequence 2:XP_006233030.1 Gene:Prpf3 / 361995 RGDID:1310555 Length:683 Species:Rattus norvegicus


Alignment Length:625 Identity:313/625 - (50%)
Similarity:404/625 - (64%) Gaps:75/625 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 GDDQKLSKKRAAASDSKSGGGSALEAPKKSRFDVPEKNGGGGEKKEEVAV--------PASLSST 66
            |||.::||:           .|.::..:..||:         |.:||..|        |..|:..
  Rat    96 GDDSEISKE-----------SSGVKKRRIPRFE---------EVEEEPEVIPGPPSESPGMLTKL 140

  Fly    67 QIKLMMAHAQREIEERKRALSNLRDKDPLLASVPSIG----MPVALATQALAKKPTPEDS-EKAR 126
            |||.||..|.|:|||||:.||.:....| ....||..    :|:....|.........|: ||||
  Rat   141 QIKQMMEAATRQIEERKKQLSFISPPAP-QPKTPSSSQPERLPIGNTIQPSQAATFMNDAIEKAR 204

  Fly   127 KIAELQAQIRAKL--------TGNLASLIQPTAVA-AAAAAAAQAQERPKPLILDDEGRTVDKSG 182
            |.|||||:|:|:|        ..|:..|....|:. |......:.|.:|.|||||::|||||.:|
  Rat   205 KAAELQARIQAQLALKPGLIGNANMVGLANLHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATG 269

  Fly   183 RTINIPTVTPTLKANIRAKKREVFQRQTGLGERSESGTSAQEEAIKYFDDRIALKPTVRTKRTLR 247
            :.:.:....|||||||||.|||.|::|  |.|:    .|...|:..:||.|:::.|:.|.:||.:
  Rat   270 KEVELTHRMPTLKANIRAVKREQFKQQ--LKEK----PSEDMESNTFFDPRVSIAPSQRQRRTFK 328

  Fly   248 FHEPGKFQQLAERMRMKSQLERLQNEISQIARKTGISSATKLALIAPKQDMPD-DVPAMEWWDSV 311
            ||:.|||:::|:|:|.|:|||:||.||||.||||||.::|:|||||||:::.: |:|.:|||||.
  Rat   329 FHDKGKFEKIAQRLRTKAQLEKLQAEISQAARKTGIHTSTRLALIAPKKELKEGDIPEIEWWDSY 393

  Fly   312 I------LTQDLETVDDASGKISIRQTAITNLIEHPTQMKPPNEPLKPVYLPVFLTKKERKKLRR 370
            |      ||::....:|..|        ||||:|||.|:.||.:...||.|.|:|||||:|||||
  Rat   394 IIPNGFDLTEENPKREDYFG--------ITNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRR 450

  Fly   371 QNRREAWKEEQEKIRLGLVAPPEPKLRISNLMRVLGSEAVQDPTKMEQHVRDQMAKRQKAHEDAN 435
            |.||||.||.|||:||||..|||||:||||||||||:||||||||:|.|||.||||||||||:||
  Rat   451 QTRREAQKELQEKVRLGLTPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEAN 515

  Fly   436 NARKLTSEQKSEKKQRKLREDTSCGVHVSVYRIRDLQDNQSKKFKVETNAKQLQMTGSVVLFRDC 500
            .|||||:||:..||.:||:||.|.|||:||||:|:| .|.:||||:|.||.||.:||.|||.:|.
  Rat   516 AARKLTAEQRKVKKVKKLKEDISQGVHISVYRVRNL-SNPAKKFKIEANAGQLYLTGVVVLHKDV 579

  Fly   501 CVVVVEGGPKQQKKYRRLMLTRIKWEE--DNAKGNDGQD-------VPNSCVLVWEGTSQRRHFG 556
            .|||||||||.|||::||||.||||:|  .|.||:|.::       ..|.||||||||::.|.||
  Rat   580 NVVVVEGGPKAQKKFKRLMLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFG 644

  Fly   557 EIKFKIFPMEKMAREFFQKHQVEHYWDLAYSGAVLEASTD 596
            |:|||..|.|.||||.|:||..|||||||.|.:||| |||
  Rat   645 EMKFKQCPTENMAREHFKKHGAEHYWDLALSESVLE-STD 683

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prp3NP_649156.1 PRP3 229..441 CDD:285741 131/218 (60%)
DUF1115 466..585 CDD:284060 75/127 (59%)
Prpf3XP_006233030.1 PWI 3..73 CDD:214609
PRP3 308..521 CDD:400749 131/220 (60%)
DUF1115 546..673 CDD:399506 75/127 (59%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353096
Domainoid 1 1.000 260 1.000 Domainoid score I1906
eggNOG 1 0.900 - - E1_KOG2769
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3447
Inparanoid 1 1.050 520 1.000 Inparanoid score I1221
OMA 1 1.010 - - QHG52127
OrthoDB 1 1.010 - - D1322299at2759
OrthoFinder 1 1.000 - - FOG0004423
OrthoInspector 1 1.000 - - oto97088
orthoMCL 1 0.900 - - OOG6_102616
Panther 1 1.100 - - LDO PTHR14212
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3705
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.810

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