DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mi-2 and Smarca1

DIOPT Version :9

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_001277637.1 Gene:Smarca1 / 93761 MGIID:1935127 Length:1062 Species:Mus musculus


Alignment Length:1220 Identity:341/1220 - (27%)
Similarity:517/1220 - (42%) Gaps:305/1220 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   558 KYDMEEPPKFEESLDEADTRYKRIQRHKDKVGMKAND-DAEVLEERFYKNGVKPEWLIVQRVINH 621
            |.:.|..|::||.:.....:..|.:|.  :..:|..: .|..::....|:...|        :|.
Mouse    73 KSEKEMDPEYEEKMVNMPLKADRAKRF--EFLLKQTELFAHFIQPSAQKSPTSP--------LNM 127

  Fly   622 RTARDGSTMYLVKWRELPYDKSTWEEEGDDIQGLRQAIDYYQDLRAVCTSETTQSRSKKSKKGRK 686
            :.||             |..|.      ||.|.|....||                       |.
Mouse   128 KLAR-------------PRVKK------DDKQSLISVGDY-----------------------RH 150

  Fly   687 SKLKVEDDEDRPVKHYTPPPEKPTTDLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYSWGQGID 751
            .:.:.|:||:      .....:.|:::..::|..|::::|.  .|..|||.|:|||...:..|::
Mouse   151 RRTEQEEDEE------LLSESRKTSNVCVRFEVSPSYVKGG--PLRDYQIRGLNWLISLYENGVN 207

  Fly   752 TILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKD 816
            .|||||||||||:||:..|..|....:..||.:|.||.|||.||..||:.|.|....|.::||||
Mouse   208 GILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKD 272

  Fly   817 SRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRL 881
            .||....:|:...|                 ::|.:||||::..:.:......|..||:|||||:
Mouse   273 VRAAFIRDEMMPGE-----------------WDVCVTSYEMVIKEKSVFKKFHWRYLVIDEAHRI 320

  Fly   882 KSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNFLSRDKFNDLQAFQGEFAD---VSKE 943
            |:.:||...|:..:....:||||||||||||.||:.|||||..|.||....|...|..   :..:
Mouse   321 KNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQ 385

  Fly   944 EQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTKNYEALNSKSGGGS 1008
            :.|:|||.:|.|.:|||:||||.|::|.|.|..:.:.||.||:::|..||.|:.:.|||......
Mouse   386 KLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGLSKMQREWYTKILMKDIDVLNSSGKMDK 450

  Fly  1009 CSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGLYEINS-LTKAAGKLVLLSKMLKQLKAQNHRV 1072
            ..|:||:|.|:|||||||||..|      ..|..|..:. :...:||:|.|.|:|.::|.|..||
Mouse   451 MRLLNILMQLRKCCNHPYLFDGA------EPGPPYTTDEHIVGNSGKMVALDKLLARIKEQGSRV 509

  Fly  1073 LIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGIN 1137
            |||||||::||||||:.....|:|.|:||......|:||||.||||.:.:|:|:|||||||||||
Mouse   510 LIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFNAPNSSKFIFMLSTRAGGLGIN 574

  Fly  1138 LATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1202
            ||:||.||:|||||||..|:||..|||||||...|.::|.:|.|:||||:.:.|:.|:.|..:|:
Mouse   575 LASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 639

  Fly  1203 RPG--MGGKGANFTKQELDDILRFGTEDLFKEDDKEEAIHYDDKAVAELLDRTNRGIEEKESWAN 1265
            :.|  :..:.....|:|:..::|.|...:|...:.|    ..|:.:..:|:|.    |:|.:..|
Mouse   640 QQGRLIDQQSNKLAKEEMLQMIRHGATHVFACKESE----LTDEDIVTILERG----EKKTAEMN 696

  Fly  1266 EYLSSFKVASYATKEEEEEEETEIIKQDAENSDPAYWVKLLRHHYEQHQEDVGRSLG------KG 1324
            |.:           ::..|......:.|.|.|       |.:...|.::|.  :.||      ..
Mouse   697 ERM-----------QKMGESSLRNFRMDLEQS-------LYKFEGEDYREK--QKLGTVEWIEPP 741

  Fly  1325 KRVRKQVNY------------TDGGVVAADTTRDDSNWQD------------------------- 1352
            ||.|| .||            ::..:..|.......|.||                         
Mouse   742 KRERK-ANYAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGY 805

  Fly  1353 ---NGSEYNSEYSAGSDEDGGDDDFDDQNGAERKAKRRLERRDDRPLPPLLARVGGNIEVLGFNA 1414
               ...|..:...|..:|....|      |||....:..|.:|     .||.:...|.....|| 
Mouse   806 KVPRNPEIPNPAIAQREEQKKID------GAEPLTPQETEEKD-----KLLTQGFTNWTKRDFN- 858

  Fly  1415 RQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFMRHLCEPGADNAETFADGVP 1479
                .|:.|..:||....|.     :.|::.|||......|.::|.....|              
Mouse   859 ----QFIKANEKYGRDDIDN-----IAREVEGKSPEEVMEYSAVFWERCNE-------------- 900

  Fly  1480 REGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELILKPCEPVRSALKQDVAALEAPPTGGN 1544
                                  :|:.|.|.......|..::....::.||...:|..:||.....
Mouse   901 ----------------------LQDIEKIMAQIERGEARIQRRISIKKALDAKIARYKAPFHQLR 943

  Fly  1545 VDKSATTSNSVTPATSAAPSPAPASEKGEDKDKDSEKEKD--------KTSAEKSEVKQE----- 1596
            :                        :.|..|.|:..:|:|        |...::..|.:|     
Mouse   944 I------------------------QYGTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELRQCV 984

  Fly  1597 QEAEEDKKPGDVKQENPVEEAAGDTKPSDAEVKTEVAKTEPKEETKDPEVKEEPKTEEKEKEKVD 1661
            :.|.:.:....:|....:|        ......|.::..|          ||..:.||:|:    
Mouse   985 RNAPQFRFDWFIKSRTAME--------FQRRCNTLISLIE----------KENMEIEERER---- 1027

  Fly  1662 DKKPIPPTTVIDDDDDDVMIVKEDGELEKPSASSPKDQKAVAAATSAATG 1711
                                    .|.:|.:..:|..||..|.:.:.::|
Mouse  1028 ------------------------AEKKKRATKTPMSQKRKAESATESSG 1053

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..190 CDD:285335
PHD1_CHD_II 380..422 CDD:277006
PHD2_CHD_II 440..482 CDD:277007
CHROMO 490..558 CDD:237991 341/1220 (28%)
CHROMO 615..667 CDD:214605 11/51 (22%)
SNF2_N 734..1028 CDD:278600 127/296 (43%)
DEXDc 751..907 CDD:238005 60/155 (39%)
Helicase_C 1053..1167 CDD:278689 70/113 (62%)
DUF1087 <1292..1337 CDD:283996 14/62 (23%)
DUF1086 1380..1517 CDD:283992 24/136 (18%)
CHDCT2 1756..1927 CDD:285336
Smarca1NP_001277637.1 PLN03142 2..1061 CDD:215601 341/1220 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 27..61
DBINO <73..114 CDD:290603 9/42 (21%)
DEXDc 207..346 CDD:238005 60/155 (39%)
DEAH box 315..318 2/2 (100%)
Helicase_C 489..604 CDD:278689 70/114 (61%)
HAND 750..848 CDD:286232 15/108 (14%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 819..840 6/26 (23%)
SANT 851..890 CDD:238096 12/48 (25%)
SLIDE 905..1017 CDD:286233 21/153 (14%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.870

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