DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mi-2 and INO80

DIOPT Version :10

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_011365.1 Gene:INO80 / 852728 SGDID:S000003118 Length:1489 Species:Saccharomyces cerevisiae


Alignment Length:1436 Identity:328/1436 - (22%)
Similarity:520/1436 - (36%) Gaps:512/1436 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   228 NEKPDDIYEEAVEE-----EEEEEEEEKKPRRKRSGRGKKGR--RPSGKVPTLKIKLLGKRKRD- 284
            |||..|..||..|:     ||:.||:|....|..:|:..:|.  :.|.|........:||..:| 
Yeast   137 NEKDADEDEEDDEDELEDGEEDMEEDEASTGRHTNGKSMRGNGIQKSRKKDAAAAAAIGKAIKDD 201

  Fly   285 ----------SSDEEQDASGASERDSDLEFERMLQKSDDS------------------ADEKEAP 321
                      :.||.:|.:...:.|:|.:.|......:|:                  .||:|..
Yeast   202 QTHADTVVTVNGDENEDGNNGEDEDNDNDNENNNDNDNDNENENDNDSDNDDEEENGEEDEEEEE 266

  Fly   322 VS--SKADNSAPAAQDDGSGA---PVVRKKAK--------TKIG-NKFKKKNKLKKTKNFPEGED 372
            :.  .:.|.:|...|||....   |.|.|:.|        ||:. |........|..||.....|
Yeast   267 IEDLDEEDFAAFEEQDDNDDEDFNPDVEKRRKRSSSSSSSTKLSMNSLSLITSKKINKNITINSD 331

  Fly   373 GEHEHQDYCEVCQQG----------GEIILCDTCP-----------RAYHLVCLEP--------- 407
            .....::..::|.:.          ...|:.|..|           :.||:..|:.         
Yeast   332 RPKIVRELIKMCNKNKHQKIKKRRFTNCIVTDYNPIDSKLNIKITLKQYHVKRLKKLINDAKRER 396

  Fly   408 ---------------ELDEPPEGKWSCPHCEADGGAAEEEDDDEHQEFCRVCKDGGELLCCDSCP 457
                           :||...:|..|....:.:...|...||...::|                 
Yeast   397 EREEALKNNVGLDGNDLDNDEDGSESHKRRKLNNNTANGADDANKRKF----------------- 444

  Fly   458 SAYHTFCLNPPLDTIPDGDWRCPRCSCPPLTGKAEKIITWRWAQRSNDDGPSTSK------GSKN 516
            :..|         .:|....:........:....:...|..|...:..|....|:      ..::
Yeast   445 NTRH---------GLPTYGMKMNAKEARAIQRHYDNTYTTIWKDMARKDSTKMSRLVQQIQSIRS 500

  Fly   517 SNSR------VREYFIKWHNMSYWHCEWVPEVQLDVHHPLMIRSFQRKYDMEEPPKFEESLDEAD 575
            :|.|      .|| ..||.:.::                ..|:.||        .:....:.|..
Yeast   501 TNFRKTSSLCARE-AKKWQSKNF----------------KQIKDFQ--------TRARRGIREMS 540

  Fly   576 TRYKRIQRH----KDKVGMKANDDA--EVLEERFYKNGVKPEWLIVQ-RVINHRTARDGSTMYLV 633
            ..:|:.:|.    |.|:..:|.:.|  |..|:...:...|..:|:.| .:.:|...|.      :
Yeast   541 NFWKKNEREERDLKKKIEKEAMEQAKKEEEEKESKRQAKKLNFLLTQTELYSHFIGRK------I 599

  Fly   634 KWRELPYDK-STWEEEGD---DIQGLR------QAIDYYQD------LRAV--CTSETTQSRSKK 680
            |..||..:. |:.:.|..   ||..|.      .|||:..:      |||.  .::...::|:|.
Yeast   600 KTNELEGNNVSSNDSESQKNIDISALAPNKNDFHAIDFDNENDEQLRLRAAENASNALAETRAKA 664

  Fly   681 SKKGRKSKLKVEDDEDRPVKHYTPPPEKPTTDLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYS 745
            .:....:....|::|:..:....|      |.|.:...:||..|..|   |..||::|:|||...
Yeast   665 KQFDDHANAHEEEEEEDELNFQNP------TSLGEITIEQPKILACT---LKEYQLKGLNWLANL 720

  Fly   746 WGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCIT 810
            :.|||:.|||||||||||:|:::.|..|.:..:..|||||..|.|||.||..|...:.|.|..:.
Yeast   721 YDQGINGILADEMGLGKTVQSISVLAHLAENHNIWGPFLVVTPASTLHNWVNEISKFLPQFKILP 785

  Fly   811 YIGDKDSRAVIRE----NELSFEEGAIRGSKVSRLRTTQYKFNVLLTSYELISMDAACLGSIDWA 871
            |.|:.:.|.|:|:    ..|.:.:.|              .|:|::|||:::..||..|..:.|.
Yeast   786 YWGNANDRKVLRKFWDRKNLRYNKNA--------------PFHVMVTSYQMVVTDANYLQKMKWQ 836

  Fly   872 VLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNFL------SRDKFN-- 928
            .:::|||..:||:||..::.|.|:....:|||||||:||:::||:.||:|:      |.|:||  
Yeast   837 YMILDEAQAIKSSQSSRWKNLLSFHCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHDEFNEW 901

  Fly   929 ---DLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYK 990
               |::: ..|......::|::|||.:|.|.||||:|.:|...:..|.|..|..:|:..|.|.|:
Yeast   902 FSKDIES-HAEANTKLNQQQLRRLHMILKPFMLRRVKKNVQSELGDKIEIDVLCDLTQRQAKLYQ 965

  Fly   991 FI---LTKNYEAL----------NSKSGGGS-CSLINIMMDLKKCCNHPYLF------------- 1028
            .:   ::.||:|:          ||.|..|| .:|||.:|..:|.||||.||             
Yeast   966 VLKSQISTNYDAIENAATNDSTSNSASNSGSDQNLINAVMQFRKVCNHPDLFERADVDSPFSFTT 1030

  Fly  1029 ----------------------------------------------------------------- 1028
                                                                             
Yeast  1031 FGKTTSMLTASVANNNSSVISNSNMNLSSMSSNNISNGKFTDLIYSSRNPIKYSLPRLIYEDLIL 1095

  Fly  1029 ---------------------------------------PSAAE--------------------- 1033
                                                   ||..|                     
Yeast  1096 PNYNNDVDIANKLKNVKFNIFNPSTNYELCLFLSKLTGEPSLNEFFRVSTTPLLKRVIERTNGPK 1160

  Fly  1034 ---------------EATTAA-------------------------------------------G 1040
                           |.|..|                                           |
Yeast  1161 NTDSLSFKTITQELLEVTRNAPSEGVMASLLNVEKHAYEREYLNCIQRGYHPNVSAPPVTIEVLG 1225

  Fly  1041 GLYEINS---------------------------------------------------------- 1047
            ..:..||                                                          
Yeast  1226 SSHVTNSINNELFDPLISQALSDIPAITQYNMHVKKGIPVEDFPKTGLFPEPLNKNFSSNISMPS 1290

  Fly  1048 ----LTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLR 1108
                :|::| ||..|.::|.:||::.|||||:.|||||:|::|::|...||.:.|:||......|
Yeast  1291 MDRFITESA-KLRKLDELLVKLKSEGHRVLIYFQMTKMMDLMEEYLTYRQYNHIRLDGSSKLEDR 1354

  Fly  1109 QEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVM 1173
            ::.:..:.. ..:.||||||||||||||||..|||||.|||||||..|.||..||||:||..:|.
Yeast  1355 RDLVHDWQT-NPEIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTIDSQAMDRAHRLGQTRQVT 1418

  Fly  1174 IYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQELD------DILRFGTEDLFKE 1232
            :||.:.|.::|||:...||:|..:..:|    |.||......:.::      ::.|.|::.:.::
Yeast  1419 VYRLLVRGTIEERMRDRAKQKEQVQQVV----MEGKTQEKNIKTIEVGENDSEVTREGSKSISQD 1479

  Fly  1233 DDKEEA 1238
            ..||.|
Yeast  1480 GIKEAA 1485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..191 CDD:462357
TNG2 <282..422 CDD:227367 38/227 (17%)
PHD1_CHD_II 380..422 CDD:277006 11/86 (13%)
PHD2_CHD_II 440..482 CDD:277007 3/41 (7%)
CD1_tandem_CHD3-4_like 487..557 CDD:349314 12/81 (15%)
CD2_tandem_CHD3-4_like 610..664 CDD:349309 15/64 (23%)
PLN03142 720..>1234 CDD:215601 214/806 (27%)
DUF1087 <1292..1334 CDD:461922
CHDII_SANT-like 1380..1517 CDD:461920
CHDCT2 1757..1902 CDD:462358
INO80NP_011365.1 DBINO 469..602 CDD:464024 28/163 (17%)
PLN03142 537..>1026 CDD:215601 160/518 (31%)
DEXQc_INO80 706..935 CDD:350760 91/243 (37%)
SF2_C_SNF 1295..1423 CDD:350180 67/129 (52%)
Blue background indicates that the domain is not in the aligned region.

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