DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mi-2 and ISW1

DIOPT Version :9

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_009804.1 Gene:ISW1 / 852547 SGDID:S000000449 Length:1129 Species:Saccharomyces cerevisiae


Alignment Length:1253 Identity:374/1253 - (29%)
Similarity:543/1253 - (43%) Gaps:341/1253 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   556 QRKYD--------------MEEPPKFEESLDEADTRYKRIQRH--KDKVGMKANDDAEVLEERFY 604
            ::|||              :|....|:..|...|....: :|:  ||..|.|.  |.|...:|| 
Yeast    49 KKKYDCISSGSIMTASEEYLENLKPFQVGLPPHDPESNK-KRYLLKDANGKKF--DLEGTTKRF- 109

  Fly   605 KNGVKPEWL-----IVQRVINHRTARDGSTMYLVKWRE----LPYDKSTWEEEGDDIQGLRQAID 660
                  |.|     :.:..|..:.|:|      .|:|:    |..:|:..:.:|.          
Yeast   110 ------EHLLSLSGLFKHFIESKAAKD------PKFRQVLDVLEENKANGKGKGK---------- 152

  Fly   661 YYQDLRAVCTSETTQSRSKKSKKGRKSKLKVEDDEDRPVKHYTPPPEKPTTDLKKKYEDQPAFLE 725
             :||:|          |.|...:.....||.||.:|             ...::.::.:.||::.
Yeast   153 -HQDVR----------RRKTEHEEDAELLKEEDSDD-------------DESIEFQFRESPAYVN 193

  Fly   726 GTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFL-YSLYKEGHCRGPFLVAVPL 789
            |   ||.||||:|:|||.......|..|||||||||||:||::|| |..|.| ...|||||..|.
Yeast   194 G---QLRPYQIQGVNWLVSLHKNKIAGILADEMGLGKTLQTISFLGYLRYIE-KIPGPFLVIAPK 254

  Fly   790 STLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLLTS 854
            |||.||.||...|.||.......|||:.||.:.:.:|                 ....|:|::.|
Yeast   255 STLNNWLREINRWTPDVNAFILQGDKEERAELIQKKL-----------------LGCDFDVVIAS 302

  Fly   855 YELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLL 919
            ||:|..:.:.|..|:|..:::|||||:|:.:|...::|..:|...:||:|||||||||.||:.||
Yeast   303 YEIIIREKSPLKKINWEYIIIDEAHRIKNEESMLSQVLREFTSRNRLLITGTPLQNNLHELWALL 367

  Fly   920 NFLSRDKFNDLQAFQGEFADVSKEEQ----VKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVE 980
            |||..|.|:|.|.|...|:..|.||.    ||:||.:|.|.:|||:|:||..::..|.|..:.|.
Yeast   368 NFLLPDIFSDAQDFDDWFSSESTEEDQDKIVKQLHTVLQPFLLRRIKSDVETSLLPKKELNLYVG 432

  Fly   981 LSAMQKKFYKFILTKNYEALNSKSGG--GSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGLY 1043
            :|:||||:||.||.|:.:|:|..:|.  ....|:||||.|:|||||||||..|      ..|..|
Yeast   433 MSSMQKKWYKKILEKDLDAVNGSNGSKESKTRLLNIMMQLRKCCNHPYLFDGA------EPGPPY 491

  Fly  1044 EINS-LTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTL 1107
            ..:. |...|.||.:|.|:||:||.:..||||||||:::||||||:.....|:|.||||......
Yeast   492 TTDEHLVYNAAKLQVLDKLLKKLKEEGSRVLIFSQMSRLLDILEDYCYFRNYEYCRIDGSTAHED 556

  Fly  1108 RQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKV 1172
            |.:|||.:|||.:::|||||:||||||||||.:||.|::|||||||..|:||..|||||||..:|
Yeast   557 RIQAIDDYNAPDSKKFVFLLTTRAGGLGINLTSADVVVLYDSDWNPQADLQAMDRAHRIGQKKQV 621

  Fly  1173 MIYRFVTRNSVEERVTQVAKRKMMLTHLVVR---------------------------------- 1203
            .::|.||.|||||::.:.|.:|:.|..||::                                  
Yeast   622 KVFRLVTDNSVEEKILERATQKLRLDQLVIQQNRTSLKKKENKADSKDALLSMIQHGAADVFKSG 686

  Fly  1204 ----------PGMGGKGANFTKQELDDIL---------------RFGTEDL--FKEDDKEEAIHY 1241
                      ||.|.||.:.   :||::|               ..|.:||  |.:|...|....
Yeast   687 TSTGSAGTPEPGSGEKGDDI---DLDELLLKSENKTKSLNAKYETLGLDDLQKFNQDSAYEWNGQ 748

  Fly  1242 DDKAVAE-------LLDRTNRGIEEKESWANEYLSSFKVASYATKEEEEEEETEIIKQDAENSDP 1299
            |.|...:       ||:.|.|..:|..|..|.|.........:|.......:..:.         
Yeast   749 DFKKKIQRDIISPLLLNPTKRERKENYSIDNYYKDVLNTGRSSTPSHPRMPKPHVF--------- 804

  Fly  1300 AYWVKLLRHHYEQHQEDVGRSLGKGKRV--RKQVNYTDGGVVAADTTRDDSNWQDNGSEYNSEYS 1362
                     |..|.|....:.|.:.:|:  .|:..|.        .|.||         ..:.|.
Yeast   805 ---------HSHQLQPPQLKVLYEKERMWTAKKTGYV--------PTMDD---------VKAAYG 843

  Fly  1363 AGSDEDGGDDDFDDQNGAERKAK---RRLERRDDRPLPPLLARVGGNIEVLGF---NARQRKSFL 1421
            ..|||:            |:|.|   .:|...:.:||.....::..:.|..||   |..:.:.|:
Yeast   844 DISDEE------------EKKQKLELLKLSVNNSQPLTEEEEKMKADWESEGFTNWNKLEFRKFI 896

  Fly  1422 NAIMRYGMPPQDAFNS-QWLVRDLR-GKSERNFKAYVSLF------------------------- 1459
            ....:||.      || |.:.|:|. ||:....:||...|                         
Yeast   897 TVSGKYGR------NSIQAIARELAPGKTLEEVRAYAKAFWSNIERIEDYEKYLKIIENEEEKIK 955

  Fly  1460 ---------MRHLCE-------------PGADNAETFADGVPREGLSR--QHVLTRIGVMSLIRK 1500
                     .|.|.|             |.::|..|:::...|..|..  ::.|.|..|..|:|.
Yeast   956 RVKMQQEALRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRD 1020

  Fly  1501 KVQE---FEHINGYYSMPELILKPCEPVRSALKQD--VAALEAPPTGGNVDKSATTSNSVTPATS 1560
            ::::   || ::.|:       :...||..|.:.:  :..||.....|.|...||          
Yeast  1021 EIRDCPLFE-LDFYF-------RSRTPVELARRGNTLLQCLEKEFNAGIVLDDAT---------- 1067

  Fly  1561 AAPSPAPASEKGEDKDKDSEKEKDKTSAEKSEVKQEQEAEEDKKPGDVKQENPVEEAAGDTKPSD 1625
                            ||..|::|:......|...:|.|.|.:....|:.:....|   ||    
Yeast  1068 ----------------KDRMKKEDENGKRIREEFADQTANEKENVDGVESKKAKIE---DT---- 1109

  Fly  1626 AEVKTE--VAKTEPKEET 1641
            :.|.||  ||:..|:.||
Yeast  1110 SNVGTEQLVAEKIPENET 1127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..190 CDD:285335
PHD1_CHD_II 380..422 CDD:277006
PHD2_CHD_II 440..482 CDD:277007
CHROMO 490..558 CDD:237991 0/1 (0%)
CHROMO 615..667 CDD:214605 10/55 (18%)
SNF2_N 734..1028 CDD:278600 134/300 (45%)
DEXDc 751..907 CDD:238005 62/156 (40%)
Helicase_C 1053..1167 CDD:278689 67/113 (59%)
DUF1087 <1292..1337 CDD:283996 7/46 (15%)
DUF1086 1380..1517 CDD:283992 39/196 (20%)
CHDCT2 1756..1927 CDD:285336
ISW1NP_009804.1 PLN03142 108..1057 CDD:215601 336/1086 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
21.870

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