DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mi-2 and CHR4

DIOPT Version :9

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_199293.3 Gene:CHR4 / 834510 AraportID:AT5G44800 Length:2223 Species:Arabidopsis thaliana


Alignment Length:2069 Identity:525/2069 - (25%)
Similarity:790/2069 - (38%) Gaps:741/2069 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   309 QKSDDSA--DEKEAPVSSKADNSAPAAQDDGSGAPVVRKKAKTKIGNKFKKKNKLKKTKNFPEGE 371
            ||.|.|.  |..|...|||     |:.|           :.||   :...::|..|:     :|.
plant    31 QKVDSSMAFDSPEYTSSSK-----PSKQ-----------RLKT---DSTPERNSSKR-----KGN 71

  Fly   372 DGEHEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHCEADGGA-------- 428
            ||.:..   |.:|..||:::.||:|||.||..||.|.|...|.|||.||.|..:..|        
plant    72 DGNYFE---CVICDLGGDLLCCDSCPRTYHTACLNPPLKRIPNGKWICPKCSPNSEALKPVNRLD 133

  Fly   429 -----AEEEDDDEHQEFCRVCKDGGELLC--------------------------------CDSC 456
                 |..:....:.:....|:...::.|                                .|.|
plant   134 AIAKRARTKTKKRNSKAGPKCERASQIYCSSIISGEQSSEKGKSISAEESKSTGKEVYSSPMDGC 198

  Fly   457 PSAY--HTFC-------------LNPPLDTIPDGDWRCPR------CSCPPL------------- 487
            .:|.  |...             |..|:  ||..|  .|.      .||..|             
plant   199 STAELGHASADDRPDSSSHGEDDLGKPV--IPTAD--LPSDAGLTLLSCEDLSESKLSDTEKTHE 259

  Fly   488 -----------------------TGKAEKIITWRWAQRSNDDG---------------------- 507
                                   |||.::    :..:|..:||                      
plant   260 APVEKLEHASSEIVENKTVAEMETGKGKR----KKRKRELNDGESLERCKTDKKRAKKSLSKVGS 320

  Fly   508 -------PSTSKGSKNSN-----------------SRVREY------FIKWHNMSYWHCE---WV 539
                   |.:||..|..|                 .:|::.      .::..|.|....|   .:
plant   321 SSQTTKSPESSKKKKKKNRVTLKSLSKPQSKTETPEKVKKLPKEERRAVRATNKSSSCLEDTNSL 385

  Fly   540 PEVQLDVHHPLMIR--------------------------------------------------- 553
            |...|.||..|..|                                                   
plant   386 PVGNLQVHRVLGCRIQGLTKTSLCSALSDDLCSDNLQATDQRDSLVQDTNAELVVAEDRIDSSSE 450

  Fly   554 -------SFQRKYDMEEPP-------KFEESLDEADTRYKRIQRHKDKVGMKAND-----DAEVL 599
                   |..|..||::..       :.:|.:...|.....:.||.|...||.::     :.|:|
plant   451 TGKSSRDSRLRDKDMDDSALGTEGMVEVKEEMLSEDISNATLSRHVDDEDMKVSETHVSVERELL 515

  Fly   600 EERFYKNGVK------------------------------------------------------- 609
            ||...:.|.|                                                       
plant   516 EEAHQETGEKSTVADEEIEEPVAAKTSDLIGETVSYEFLVKWVDKSNIHNTWISEAELKGLAKRK 580

  Fly   610 -----------------PEWLIVQRVINHRTARDGSTMYLVKWRELPYDKSTWEE-EGDDIQGLR 656
                             .:|...||::..|.:::|:....|||..|.||:.|||. |...::...
plant   581 LENYKAKYGTAVINICEDKWKQPQRIVALRVSKEGNQEAYVKWTGLAYDECTWESLEEPILKHSS 645

  Fly   657 QAIDYYQDLRAVCTSETTQSRSKKSKKGRKSKLKVEDDEDRPVKHYTPPPEKPTTDLKKKYEDQP 721
            ..||.:.        :..|...:::.||..::.:.|      |...|               :||
plant   646 HLIDLFH--------QYEQKTLERNSKGNPTRERGE------VVTLT---------------EQP 681

  Fly   722 AFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVA 786
            ..|.|..:..|  |:|.:||||..|.:..:.|||||||||||:....||.|||.|.....|.||.
plant   682 QELRGGALFAH--QLEALNWLRRCWHKSKNVILADEMGLGKTVSASAFLSSLYFEFGVARPCLVL 744

  Fly   787 VPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVL 851
            |||||:.||..||.||||....:.|.|....||:||:.|..     .:.|..:..:.|.||||||
plant   745 VPLSTMPNWLSEFSLWAPLLNVVEYHGSAKGRAIIRDYEWH-----AKNSTGTTKKPTSYKFNVL 804

  Fly   852 LTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELF 916
            ||:||::..|::.|..:.|.||||||.||||:::||.|.:||:::..:::||||||||||:.|::
plant   805 LTTYEMVLADSSHLRGVPWEVLVVDEGHRLKNSESKLFSLLNTFSFQHRVLLTGTPLQNNIGEMY 869

  Fly   917 HLLNFLSRDKFNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVEL 981
            :|||||....|..|.:|:..|.|::..|:|:.|.:::.||||||||.|.::|:|.|:|.:|.|||
plant   870 NLLNFLQPSSFPSLSSFEERFHDLTSAEKVEELKKLVAPHMLRRLKKDAMQNIPPKTERMVPVEL 934

  Fly   982 SAMQKKFYKFILTKNYEAL-NSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGLYEI 1045
            :::|.::|:.:|||||:.| |...|....|::||:|.|:|.||||||.|....|    :|.|..:
plant   935 TSIQAEYYRAMLTKNYQILRNIGKGVAQQSMLNIVMQLRKVCNHPYLIPGTEPE----SGSLEFL 995

  Fly  1046 NSL-TKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGE--QYKYERIDGGITGTL 1107
            :.: .||:.||.||..|||.|..:.|||||||||||:||||||:|..|  ...:||:||.:....
plant   996 HDMRIKASAKLTLLHSMLKVLHKEGHRVLIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVAD 1060

  Fly  1108 RQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKV 1172
            ||.||.||| ....:|||||||||.||||||||||||||||||:|||.||||.:|||||||:.::
plant  1061 RQAAIARFN-QDKNRFVFLLSTRACGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRL 1124

  Fly  1173 MIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQELDDILRFGTEDLFK----ED 1233
            ::||.|.|.|||||:.|:||:|:||..|.|       ..:.:::|.:||||:|||:||.    |:
plant  1125 LVYRLVVRASVEERILQLAKKKLMLDQLFV-------NKSGSQKEFEDILRWGTEELFNDSAGEN 1182

  Fly  1234 DKEEA-------------------------------------IHYDDKAVAELLDRTNRGIEEKE 1261
            .|:.|                                     |.:||.|:.:||||:|  ::...
plant  1183 KKDTAESNGNLDVIMDLESKSRKKGGGLGDVYQDKCTEGNGKIVWDDIAIMKLLDRSN--LQSAS 1245

  Fly  1262 SWA------NEYLSSFKVASY--ATKEEE------------------EEEETEIIKQDAENSDPA 1300
            :.|      |:.|.|.|...:  .|.||:                  |.::.:::....||.   
plant  1246 TDAADTELDNDMLGSVKPVEWNEETAEEQVGAESPALVTDDTGEPSSERKDDDVVNFTEENE--- 1307

  Fly  1301 YWVKLLRHHYEQHQEDVGRSLGKGKRVRKQVNYTDGGVVAADTTRDDSNWQDNGSEYNSEYSAGS 1365
             |.:|||..:|::|.:...:||:|||:||.|:|.:.                    |....|...
plant  1308 -WDRLLRMRWEKYQSEEEAALGRGKRLRKAVSYREA--------------------YAPHTSGPV 1351

  Fly  1366 DEDGGDDDFD-------DQNGAERKAKRRLERRDDRPLPPLLAR--------VGGNIEVLGFNAR 1415
            :|.||:|:.:       :...|.|..|.:..:..:|. ..|:||        ..||::.:...|.
plant  1352 NESGGEDEKEPEPELKKEYTPAGRALKEKFTKLRERQ-KNLIARRNSVEESLPSGNVDQVTEVAN 1415

  Fly  1416 QRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFMRH------------------ 1462
            |.:....:     |...|:..||......|..|..:.|.  .|..:|                  
plant  1416 QDEESPTS-----MDLDDSKASQQCDAQKRKASSSDPKP--DLLSQHHHGAECLPSLPPNNLPVL 1473

  Fly  1463 -LCEPGADNAETFADGVPREGLSRQHVLTRIG---------VMSLIRKKVQEFEHINGYYSMPEL 1517
             ||.|....:|:......|.|..:...:|  |         ..:|:.::..:.|...|.      
plant  1474 GLCAPNFTQSESSRRNYSRPGSRQNRPIT--GPHFPFNLPQTSNLVEREANDQEPPMGK------ 1530

  Fly  1518 ILKPCEPVRSALKQDVAALEA-------PPTGGNVDKSATTSNSVTPATSAAPSPAPASEKGEDK 1575
             |||........:|.::.::.       ||:|                                 
plant  1531 -LKPQNIKEEPFQQPLSNMDGWLPHRQFPPSG--------------------------------- 1561

  Fly  1576 DKDSEKEKDKTSAEKSEVKQEQEAEEDKKPGDVKQENPVEEAAGDTK-------------PSDAE 1627
              |.|:.:...:|.                .|.:::.|:.....|.|             .|..:
plant  1562 --DFERPRSSGAAF----------------ADFQEKFPLLNLPFDDKLLPRFPFQPRTMGTSHQD 1608

  Fly  1628 VKTEVAKTEPKEET----KD----------PEVK----EEPKTEEKEKEKVDDKKPIPPTTVIDD 1674
            :...::..:..|.|    :|          |.:|    :.|...::||:       :||.     
plant  1609 IMANLSMRKRFEGTGHSMQDLFGGTPMPFLPNMKIPPMDPPVFNQQEKD-------LPPL----- 1661

  Fly  1675 DDDDVMIVKEDGELEKPSA--SSPKDQKAVAAATSAATGATGKGAEDSLEVLKRKFMFNIADGGF 1737
                       |..:.|||  |.|::.:.|.......|| :|.|     .|.|:|  ..:.....
plant  1662 -----------GLDQFPSALSSIPENHRKVLENIMLRTG-SGIG-----HVQKKK--TRVDAWSE 1707

  Fly  1738 TELHTLWLNEEKAAVPGREYEIWHRRHDYWLLAGIVTHGYGRWQDIQND--IRFAIINEPFKMDV 1800
            .||.:||:                         ||..||||.|:.|..|  ::|:....|     
plant  1708 DELDSLWI-------------------------GIRRHGYGNWETILRDPRLKFSKFKTP----- 1742

  Fly  1801 GKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYL-NLAQDPSHPAMSLNARFAEVECLAESHQ 1864
                      ::||.|:         ||:.|:  :| :|:..||..:.:               .
plant  1743 ----------EYLAARW---------EEEQRK--FLDSLSSLPSKSSRT---------------D 1771

  Fly  1865 HLSKESLAGNKPANAVLHKVLN-------QLEELLSDMKSDVSRLPATLARIPP 1911
            ..:|.||....| ..::::.|:       :.:..|:|:|.....|.:.|....|
plant  1772 KSTKSSLFPGLP-QGIMNRALHGKYATPPRFQSHLTDIKLGFGDLASPLPLFEP 1824

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..190 CDD:285335
PHD1_CHD_II 380..422 CDD:277006 21/41 (51%)
PHD2_CHD_II 440..482 CDD:277007 12/94 (13%)
CHROMO 490..558 CDD:237991 20/180 (11%)
CHROMO 615..667 CDD:214605 16/52 (31%)
SNF2_N 734..1028 CDD:278600 139/294 (47%)
DEXDc 751..907 CDD:238005 74/155 (48%)
Helicase_C 1053..1167 CDD:278689 76/115 (66%)
DUF1087 <1292..1337 CDD:283996 17/44 (39%)
DUF1086 1380..1517 CDD:283992 31/172 (18%)
CHDCT2 1756..1927 CDD:285336 32/166 (19%)
CHR4NP_199293.3 PHD2_CHD_II 78..119 CDD:277007 21/40 (53%)
HepA 445..1168 CDD:223627 290/770 (38%)
CHROMO 530..587 CDD:214605 0/56 (0%)
Chromo 602..653 CDD:278797 16/58 (28%)
DEXDc 708..860 CDD:238005 74/156 (47%)
Helicase_C 1003..1119 CDD:278689 76/116 (66%)
DUF1087 1289..1339 CDD:283996 17/53 (32%)
SANT_TRF 1705..1749 CDD:212558 17/83 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 79 1.000 Domainoid score I3028
eggNOG 1 0.900 - - E2759_KOG0383
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D54215at2759
OrthoFinder 1 1.000 - - FOG0000546
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_101931
Panther 1 1.100 - - O PTHR45623
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.820

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