DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mi-2 and chd6

DIOPT Version :9

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:XP_699360.5 Gene:chd6 / 570753 ZFINID:ZDB-GENE-130530-559 Length:2953 Species:Danio rerio


Alignment Length:2165 Identity:541/2165 - (24%)
Similarity:841/2165 - (38%) Gaps:672/2165 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   101 RGRKRKEEKQAAKEKESASSGMPSVEDVCSAFSVCNVEIEYSEEELQSLTTYKAFMHHVRPI--L 163
            |.|.:::||...::|:...|....::...|| :..|.    |::..|  ||:        ||  |
Zfish    10 RRRHKEQEKMKIQKKDKQMSASYVLKHTPSA-AASNA----SDQNAQ--TTF--------PIGHL 59

  Fly   164 QKENPKI---------AAPKLVMLVAAKWREFCESNPHI-------------QQEGGAAGSGGSA 206
            .||..:|         |.||             .|.|.:             :.:||    ||:.
Zfish    60 GKEQLRIIGGPPNHCMAHPK-------------HSGPAVSSHSLRPSMINNEEDDGG----GGTK 107

  Fly   207 GQARSVTGDEPEEPRSSRSSRNEKPDDIYEEAVEEEEEEE--------EEEKKPRRKRSGRGKKG 263
            .:.:....|:.|.........|.||     :..|::|.:|        .:|:|..:||..:.:|.
Zfish   108 VKKKRRKKDKKESEWHEDGQSNAKP-----KRREQKEGKEILPRKTKTAKEQKDHKKRDAKAQKE 167

  Fly   264 RRPSGKVPTLKIKLLGKR--------KRDSSDEEQDA-------SGASERDSDLEFERMLQKSDD 313
            .:...|...:|:|.|.|.        ||....:||.|       .|..:.|:.||    :.:|||
Zfish   168 VKKVKKGQDVKVKTLAKNQCATHTPSKRGRKPKEQGAMPPEKKKKGKRKSDAVLE----MVESDD 228

  Fly   314 SA---------DEKEAPVSSKADNSAPAAQDDGSGAPVVRKKAKTKIGNKFKKKNKLKKTKNFP- 368
            :|         :|...|:    ||:                  |.:.|.:.|:: |..:..:|. 
Zfish   229 TASLSTLATGGEESTDPM----DNT------------------KRRSGRQVKRR-KYNEDLDFKV 270

  Fly   369 EGEDGEHEHQDYCEVCQQG-GEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHCEADGGAAEEE 432
            ..:|||       .:...| |.|....:...|:       :.:||||                  
Zfish   271 VDDDGE-------TIAVLGSGRIAAMSSSTLAW-------QAEEPPE------------------ 303

  Fly   433 DDDEHQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRCSCPPLTGKAEKIITW 497
                         |...::                                        |||::.
Zfish   304 -------------DEANII----------------------------------------EKILSV 315

  Fly   498 RWAQR--SNDDGPSTSKGSKNSNSRVREYFIKWHNMSYWHCEWVPEVQLDVHHPLMIRSFQRKYD 560
            |...:  :.|:.|          ..:.|:::|:.|.||.||:|....:|                
Zfish   316 RTVNKEMAPDEPP----------EEMEEFYVKYRNFSYLHCKWATLEEL---------------- 354

  Fly   561 MEEPPKFEESLDEADTRYKRIQRHKDKVGMKANDDAEVLEERFYKNGVKPEWLIVQRVINHRTAR 625
             |:.|:.          :::|:|.::|.....:...|..|:.|     .|:::.|.||:......
Zfish   355 -EKDPRI----------HQKIKRFRNKQAQMKHIFTEPDEDLF-----NPDYIEVDRVLEIAITT 403

  Fly   626 DGS-----TMYLVKWRELPYDKSTWEEEGDDIQGLRQAIDYYQDLRAVCTSETTQSRSKKSKKGR 685
            |..     |.|||||..|.|::||||.: :|:..::  |..:::|:                   
Zfish   404 DTETGEEVTHYLVKWCSLSYEESTWELQ-EDVDPVK--IKEFEELK------------------- 446

  Fly   686 KSKLKVEDDEDRPVKHYTPPPEKPTTDLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYSWGQGI 750
                ||.:     :||.    |:|..:..:|.|....:..|.  ||..||:||:|||.::|....
Zfish   447 ----KVPE-----MKHV----ERPLPEQWQKLEKSRDYRNGN--QLREYQLEGMNWLLFNWYNRK 496

  Fly   751 DTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDK 815
            :.|||||||||||||::||||.::..| .|||||:..||||:.||||||..|. :...|.|.|.:
Zfish   497 NCILADEMGLGKTIQSITFLYEIFLMG-LRGPFLIIAPLSTITNWEREFRTWT-EMNVIVYHGSQ 559

  Fly   816 DSRAVIRENELSF--EEGAIRGSKVSRLRTTQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEA 878
            .||.:|.:.|:..  |:|.|...        ::||..::|::|:|..|...|..|:|..:|:|||
Zfish   560 ISRQMILQYEMYHRDEQGNIMSG--------EFKFQGVITTFEMIMADCPELKKINWRCVVIDEA 616

  Fly   879 HRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNFLSRDKFNDLQAFQGEFADVSKE 943
            ||||:...|....|....:.:|:|||||||||::||||.|||||...:|.....|..||.|:..|
Zfish   617 HRLKNRNCKLLEGLKLMNLEHKVLLTGTPLQNSVEELFSLLNFLEPSQFPSETTFLEEFGDLKTE 681

  Fly   944 EQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTKNYEALNSKSGGGS 1008
            ||||:|..:|.|.||||||.||.||:..|.|.|:.|||:.:|||:|:.||.||:..|...:...:
Zfish   682 EQVKKLQAILKPMMLRRLKDDVEKNLAPKEETIIEVELTNIQKKYYRAILEKNFAFLAKGANQHN 746

  Fly  1009 C-SLINIMMDLKKCCNHPYLFPSAAEE---------ATTAAGGLYEINSLTKAAGKLVLLSKMLK 1063
            . :|||.||:|:||||||||...|.|:         ::.||.  :::.::.:|||||||:.|:|.
Zfish   747 MPNLINTMMELRKCCNHPYLITGAEEKILESFRKTYSSDAAD--FQLQAMIQAAGKLVLIDKLLP 809

  Fly  1064 QLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLS 1128
            :|.|..|:||:||||.:.||||||:|...:|.||||||.:.|.|||.|||||:...:.:|||||.
Zfish   810 KLLAGGHKVLVFSQMVRCLDILEDYLIQRRYTYERIDGRVRGNLRQAAIDRFSKVDSDRFVFLLC 874

  Fly  1129 TRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKR 1193
            ||||||||||..|||.||:||||||.||:||.:|.|||||:..|.:||.:||||.|..:...|..
Zfish   875 TRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKAVKVYRLITRNSYEREMFDKASL 939

  Fly  1194 KMMLTHLVVRPGMGGKGA-----NFTKQELDDILRFGTEDLFKEDDKEEAIHYDDKAVAELLDRT 1253
            |:.|...|:: .:..||:     ..:|.|::|:||.|...... |:::|...:.::.:.::|.|.
Zfish   940 KLGLDKAVLQ-DINRKGSLNGVQQLSKMEVEDLLRKGAYGALM-DEEDEGSKFCEEDIDQILQRR 1002

  Fly  1254 NRGIEEKESWANEYLSSFKVASYATKEEEEEEETEIIKQDAENSDPAY---WVKLLRHHYEQHQE 1315
            .:.|..:.....   |:|..||:.:...         :.|....||.:   |.|:.....:...|
Zfish  1003 TQTITIQSEGKG---STFAKASFVSSGN---------RTDISLDDPNFWQKWAKIAELEIDSKAE 1055

  Fly  1316 DVGRSLGKGKRVRKQVNYTDGGVVAADTTRDDSNWQDNGSEYNSEYSAGSDEDGGDDDFDDQNGA 1380
            .....:.. .|||||             ||..::::|:.....||.              |.:..
Zfish  1056 KESLVIDT-PRVRKQ-------------TRHYNSFEDDELMEFSEL--------------DSDSE 1092

  Fly  1381 ERKAK-RRLERRDDRPLPPLLARVGGNIEVLGFNARQRKSFLN------------------AIMR 1426
            ||..: |||..|:.|.|.....||..|:.:.|:.  :.|..||                  |::.
Zfish  1093 ERPCRTRRLSDRNRRYLRAECFRVEKNLLIFGWG--RWKDILNHGRFKWHLAERDMEVLCRALLV 1155

  Fly  1427 YGM------------------PPQDAFN---------SQWLVRDLRGKSERNFKAYVSLFMRHLC 1464
            |.:                  |.:|..|         |..:.|..:||..:|          .|.
Zfish  1156 YCVRHYKGDDKIKSFIWDLITPTEDGHNQALQNHSGLSAPVPRGRKGKKLKN----------QLS 1210

  Fly  1465 EPGADNAETFADGVPREGLS--------RQH---VLTRIGVMSLIRKKVQEFEHINGYYSMPELI 1518
            .|...||:..|...|...|.        :||   ||.|:.::..::.:|...........:|...
Zfish  1211 PPELKNADWLAHCNPEVVLQDDSYKKHLKQHCNKVLLRVRMLYYLKVEVLGDAATQALEGIPSSK 1275

  Fly  1519 LKPCEPVRSALKQDVAALEAPPT--GGNVDKSA-------------------------------T 1550
            |:...|       |:..:|.|..  ....|||.                               .
Zfish  1276 LEVTLP-------DIDYIEIPTIWWDAEADKSLLIGVHKHGYERYNAMRADPALCFLERVGMPDV 1333

  Fly  1551 TSNSVTPATSAAPSPAPASEKGEDKDKDSEKEKDKTSAEKSEVKQEQEAEEDKKPGDVKQENPVE 1615
            |:.:|..:.:..||.||......|:.|:....|.:...||.|:|:|..::|..|..::.....|.
Zfish  1334 TALTVEQSGAETPSDAPDGISKSDEIKEENHVKSEELEEKVEIKEEPMSDETAKNDNMVTGCFVA 1398

  Fly  1616 EAAGDTK-----------PSDAEVKTEVAK----------------------------------- 1634
            ..|||..           |:.:.:...:.:                                   
Zfish  1399 SLAGDLTAELMEQGRIQWPAGSALTARLRRLITAYQRYTRREPLRHDFLLHEGIAPVAWQIGEFR 1463

  Fly  1635 ---TEPKEETKDPEVKEEPKTEEKEKEKVDDKKPIPPTTVIDDDDDDVMIVKEDGELEKPSASSP 1696
               |||     ||...|..:...: :|:.|..:.:....|:.|.:      |::.:..:..|.:.
Zfish  1464 HCTTEP-----DPLFLEWQRRWTR-REQADFYRTVSSFGVVYDPE------KKNFDWSQFRALAR 1516

  Fly  1697 KDQKAVAAATSAATGATGKGAEDSLE---------------VLKRKFMFNIADGGFTELHTLWLN 1746
            .::|                .::|||               :..||...|:....|.:.    :.
Zfish  1517 LERK----------------TDESLERYFHSFVSMCRTACRLPPRKDEGNVDPSLFVDP----IT 1561

  Fly  1747 EEKAA-----------------------------VPGREYEIWHR--RHDYWLLAGIVTHGYGRW 1780
            ||:||                             .|.....:|..  :||..||.|:..||..|.
Zfish  1562 EERAARTLYRIELLRKVREQVLRHPLLGARLQLCRPSLYLPVWWECGKHDRDLLIGVAKHGLSRT 1626

  Fly  1781 QDIQNDIRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRAAYLNLAQDPSHP 1845
            .       |.|:|:|      :.:|||....:             :.::..|.....|   |.|.
Zfish  1627 D-------FYILNDP------QLSFLEAHRNY-------------VHKENHRYPVPGL---PHHH 1662

  Fly  1846 AMSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSDVSRLPATLARI- 1909
            ....:|.....:.......|          |..|  |....||.......:|..:..|.:...| 
Zfish  1663 CCLYDANIGHCQSPQPPEYH----------PTPA--HHTPTQLVHTHGHHQSSEASEPGSSLGIG 1715

  Fly  1910 ----------PPVAQRLQMSERSILSRLAATAG--NASNAAQLMAQFPAGFQGTTLPAFTSGPAG 1962
                      ||:...|::..   |.....|:.  :..:..:....||          |.|...|
Zfish  1716 SGNREGFLDCPPLDDSLELGS---LQHEGLTSDTLHGKSGKEAFNGFP----------FNSATGG 1767

  Fly  1963 NFANFRPQFSVPGQLSNNSG 1982
            .  |....:.|.|:|:...|
Zfish  1768 Q--NMLNSYGVQGELNGTQG 1785

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..190 CDD:285335 13/62 (21%)
PHD1_CHD_II 380..422 CDD:277006 8/42 (19%)
PHD2_CHD_II 440..482 CDD:277007 1/41 (2%)
CHROMO 490..558 CDD:237991 15/69 (22%)
CHROMO 615..667 CDD:214605 19/56 (34%)
SNF2_N 734..1028 CDD:278600 141/296 (48%)
DEXDc 751..907 CDD:238005 68/157 (43%)
Helicase_C 1053..1167 CDD:278689 72/113 (64%)
DUF1087 <1292..1337 CDD:283996 11/47 (23%)
DUF1086 1380..1517 CDD:283992 39/193 (20%)
CHDCT2 1756..1927 CDD:285336 34/183 (19%)
chd6XP_699360.5 CHROMO 309..370 CDD:237991 19/137 (14%)
Chromo 392..445 CDD:278797 18/55 (33%)
SNF2_N 480..767 CDD:278600 141/296 (48%)
DEXDc 496..645 CDD:238005 68/158 (43%)
Helicase_C 799..913 CDD:278689 72/113 (64%)
BRK 2562..2606 CDD:197800
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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