DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mi-2 and phf21ab

DIOPT Version :9

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:XP_021326289.1 Gene:phf21ab / 565544 ZFINID:ZDB-GENE-030131-6456 Length:892 Species:Danio rerio


Alignment Length:225 Identity:61/225 - (27%)
Similarity:88/225 - (39%) Gaps:67/225 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   212 VTGDEPEEPRSSRSSRNEK--PDDIYEEAVEEEEEEEEEEKKPRRKRS-----------GRGKKG 263
            ||.|..||.:|.|..|..:  .:.:|..||.|          |.||:|           |..|:|
Zfish   432 VTHDHLEEIQSRRQERKRRTTANPVYSGAVFE----------PERKKSAVTYLNTPLHQGTRKRG 486

  Fly   264 RRPSGKVPTLKIKLLGKRKRDSSDEEQDASGASERDSDLEFERMLQKSDDSADEKEAPVSSKADN 328
            |.|.....|                 ...:.:|....:|....:|           :|.||...:
Zfish   487 RPPKYSTTT-----------------TTTTSSSTAVPELGCNPLL-----------SPTSSLPAS 523

  Fly   329 SAPAAQDDGSGAPVVRKKAKTKIGNKFKKKNKLKKTKNFPEGEDGEHEHQDYCEVCQQGGEIILC 393
            .||...|.| |.|:              ..:.....:..|...||: .|:|:|.||::.|::::|
Zfish   524 PAPERPDTG-GFPL--------------SVHPHSVPQPSPSSGDGD-IHEDFCTVCRRSGQLLMC 572

  Fly   394 DTCPRAYHLVCLEPELDEPPEGKWSCPHCE 423
            |||.|.|||.||:|.|...|:|.|.||.|:
Zfish   573 DTCSRVYHLDCLDPPLKNIPKGMWICPKCQ 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..190 CDD:285335
PHD1_CHD_II 380..422 CDD:277006 21/41 (51%)
PHD2_CHD_II 440..482 CDD:277007
CHROMO 490..558 CDD:237991
CHROMO 615..667 CDD:214605
SNF2_N 734..1028 CDD:278600
DEXDc 751..907 CDD:238005
Helicase_C 1053..1167 CDD:278689
DUF1087 <1292..1337 CDD:283996
DUF1086 1380..1517 CDD:283992
CHDCT2 1756..1927 CDD:285336
phf21abXP_021326289.1 STAT_alpha 64..>125 CDD:307245
PHD_PHF21A 559..601 CDD:276998 21/41 (51%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0383
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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