DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mi-2 and smarca1

DIOPT Version :10

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_001093467.1 Gene:smarca1 / 559803 ZFINID:ZDB-GENE-070705-296 Length:1036 Species:Danio rerio


Alignment Length:1097 Identity:326/1097 - (29%)
Similarity:491/1097 - (44%) Gaps:259/1097 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   671 SETTQSRSKKSKKGR--------KSKLKVEDDEDRPVKHYTPPPEKPTTDLKK------KYEDQP 721
            |:.:.:...|.|.||        ::.|.|.|:..|..:.  ...|:..::.:|      ::|:.|
Zfish    73 SQKSPTSPLKVKMGRPRIKQDEKQNLLSVGDNRHRRTEQ--EEDEELLSESRKADNVLVRFEESP 135

  Fly   722 AFLE-GTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLV 785
            :::: ||   |..|||.|:||:...:..||:.|||||||||||:||:..|..|....:..||.:|
Zfish   136 SYIKNGT---LRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMV 197

  Fly   786 AVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAV-IRENELSFEEGAIRGSKVSRLRTTQYKFN 849
            .||.|||.||..||:.|.|....:..||:||.||. ||:..:..|                  ::
Zfish   198 LVPKSTLHNWMNEFKRWVPTLKAVCLIGNKDERAAFIRDVMMPGE------------------WD 244

  Fly   850 VLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEE 914
            |.:||||::..:.:.....:|..||:|||||:|:.:||...|...:....:||||||||||||.|
Zfish   245 VCVTSYEMVIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIAREFKTTNRLLLTGTPLQNNLHE 309

  Fly   915 LFHLLNFLSRDKFNDLQAFQGEFAD--VSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIV 977
            |:.|||||..|.||....|...|..  :..::.|:|||.:|.|.:|||:|.:|.|::|.|.|..:
Zfish   310 LWSLLNFLLPDVFNSASDFDSWFDTNCLGDQKLVERLHAVLRPFLLRRIKAEVEKSLPPKKEVKI 374

  Fly   978 RVELSAMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGL 1042
            .:.||.||:::|..||.|:.:.|||........|:||:|.|:|||||||||..|...........
Zfish   375 YLGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDTH 439

  Fly  1043 YEINSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTL 1107
            ..|||     ||:|.|.|:|.:::.|..|||||||||::||||||:.....::|.|:||......
Zfish   440 LVINS-----GKMVALDKLLPKVQEQGSRVLIFSQMTRVLDILEDYCMWRGFEYCRLDGNTPHEA 499

  Fly  1108 RQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKV 1172
            |::|||.||||.:.:|:|:||||||||||||||||.||:|||||||..|:||..|||||||...|
Zfish   500 REQAIDAFNAPNSSKFIFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQRKPV 564

  Fly  1173 MIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPG-MGGKGANFTKQELDDILRFGTEDLFKEDDKE 1236
            .::|.:|.|:||||:.:.|:.|:.|..:|::.| :..:.....|.|:..::|.|...:|...|.|
Zfish   565 KVFRLITDNTVEERIVERAEMKLRLDSIVIQQGRLIDQQNKLGKDEMLQMIRHGATHVFASKDSE 629

  Fly  1237 EAIHYDDKAVAELLDR----TNRGIEEKESWANEYLSSFKVASYATKEEEEEEETEIIKQDAENS 1297
                ..|:.:..:|:|    |....|..::.....|.:|.|.:.||       ||.:...:.|: 
Zfish   630 ----LTDEDIDTILERGAKKTAEMNERMQNLGESSLRNFTVDTGAT-------ETSLYNFEGED- 682

  Fly  1298 DPAYWVKLLRHHYEQHQEDVG---------------RSLGKG--------KRVRKQVNYTDGGVV 1339
                        |.:.|: ||               :|:...        ||.|| .||.     
Zfish   683 ------------YREKQK-VGVFIFGHLIFVHIAVLKSINLSLIEWIEPPKRERK-ANYA----- 728

  Fly  1340 AADTTRDDSNWQD--NGSEYNSEYSAGSDEDGGDDDF---------------------------- 1374
                  .|:.:::  ..||..:..:....:.....||                            
Zfish   729 ------VDAYFREALRVSEPRAPKAPRPPKQPNIQDFQFFPPRLFELLEMEILYYRKTIGYKVPR 787

  Fly  1375 --DDQNGA--ERKAKRRLERRDDRPLPPLLARVGGNIEVLGF---NARQRKSFLNAIMRYGMPPQ 1432
              |..|.|  :::.:|:::..:  ||.|........:...||   |.|....|:.|..:||....
Zfish   788 SPDIPNSAQVQKEEQRKIDEAE--PLSPEETEEKEKLLTQGFTNWNKRDFNQFIKANEKYGRDDI 850

  Fly  1433 DAFNSQWLVRDLRGKSERNFKAYVSLFMRHLCEPGADNAETFADGVPREGLSRQHVLTRIGVMSL 1497
            |.     :.|::.||:......|.::|.....|                                
Zfish   851 DN-----IAREVEGKTPEEVMEYSAVFWERCNE-------------------------------- 878

  Fly  1498 IRKKVQEFEHINGYYSMPELILKPCEPVRSALKQDVAALEAP------PTGGNVDKSATTSNSVT 1556
                :|:.|.|.......|..::....::.||...:|..:||      ..|.|..|:.|      
Zfish   879 ----LQDIEKIMAQIERGEARIQRRISIKKALDVKIARYKAPFHQLRIQYGTNKGKNYT------ 933

  Fly  1557 PATSAAPSPAPASEKGEDK-----------DKDSEKE------------------KDKTSAEK-- 1590
                          :.||:           ||:...|                  |.:|:.|.  
Zfish   934 --------------EEEDRFLICMLHKMGFDKEYVYEELRQCVRNAPQFRFDWFIKSRTAMELQR 984

  Fly  1591 ------SEVKQEQEAEEDKKPGDVKQENPVEEAAGDTKPSDAEVKTEVAKTEPKEET 1641
                  |.:::|....|:|:..:.|:..|..::|...|   |||.:|  |.|.|..|
Zfish   985 RCNTLISLIEKENMEIEEKERAEKKRRTPKGQSAQKRK---AEVSSE--KKEKKART 1036

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..191 CDD:462357
TNG2 <282..422 CDD:227367
PHD1_CHD_II 380..422 CDD:277006
PHD2_CHD_II 440..482 CDD:277007
CD1_tandem_CHD3-4_like 487..557 CDD:349314
CD2_tandem_CHD3-4_like 610..664 CDD:349309
PLN03142 720..>1234 CDD:215601 224/518 (43%)
DUF1087 <1292..1334 CDD:461922 11/64 (17%)
CHDII_SANT-like 1380..1517 CDD:461920 23/141 (16%)
CHDCT2 1757..1902 CDD:462358
smarca1NP_001093467.1 PLN03142 54..1033 CDD:215601 324/1092 (30%)
Blue background indicates that the domain is not in the aligned region.

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