DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mi-2 and smarcad1

DIOPT Version :10

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_001015697.1 Gene:smarcad1 / 548414 XenbaseID:XB-GENE-492700 Length:1003 Species:Xenopus tropicalis


Alignment Length:1097 Identity:289/1097 - (26%)
Similarity:459/1097 - (41%) Gaps:257/1097 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 RKRSGRGKK-----GRRPSGKVPTLKIKLL------------GKRKRDSSDEEQDASGASERDSD 301
            |.|..:|||     |.:.:...|:.....|            .||..:.|..::| .|.|..|||
 Frog     8 RFRFDKGKKIDTEFGEKGASSRPSTPNSQLEDHVTSIPETPEAKRVNNPSLFKKD-KGVSFLDSD 71

  Fly   302 LEFERMLQKSDDSADEKEAPVSSKADNSAPAAQDDGSGAPVVRK----KAKTKIGNKFKKKNKLK 362
            .|.|....||..|:..:::....:...|.....|.......|::    .|:.|.|:|:|...:||
 Frog    72 SENEDHQSKSKFSSTHQQSHPREENGTSDSVTDDSEDDYLAVKRPSASTAQVKDGSKYKNLQRLK 136

  Fly   363 KTKNFPEGEDGEHEHQDYCEVCQQGGEII-LCDTCPR-----AYHLVCLEPE-------LDEPP- 413
            :.  ||:               |...|:: |.::...     |..:|....|       |||.| 
 Frog   137 EI--FPK---------------QNNDELLKLIESTSTLDGAVAAGVVLFNKEGSSRKRKLDEVPK 184

  Fly   414 ------EG-------KWSCPHCEADGGAAEEEDDDEHQEFCRVCKDGGELLCCDSCPSAYHTFCL 465
                  ||       |.......:|..::..|||.|.||              .|.......|  
 Frog   185 DSSPVHEGINGQTKKKKKIDRVSSDNDSSLSEDDWEKQE--------------ASVKKLQRHF-- 233

  Fly   466 NPPLD------TIPDGDWRCPRC----------SCPPLTGKAEK-IITWRWAQRSN-DDGPSTSK 512
             |.||      .:.:.||.....          ....|...|:| :...:...||| :|..|::|
 Frog   234 -PDLDKEELREVLQEHDWSFHEALEALKLFAEDETDALQNAAKKEVSNGKEFSRSNKNDNKSSAK 297

  Fly   513 GSKNSNSRVREYFIKWHNMSYWHCEWVPEVQLDVHHPLMIRSFQRKYDMEEPPKFEESLDEADTR 577
            ...|.||                            :..|.::..:|  ..:..|:.|:. :.|||
 Frog   298 AKANQNS----------------------------NKAMAQNGVKK--KGKGKKYSENA-KRDTR 331

  Fly   578 YKRIQRHKDKVGMKANDDAEVLEERFYKNGVKPEWLIVQRVINHRTARDGSTMYLV--------- 633
            ....:.       .|:|....|:|.:.....|.|.....::::.........:||:         
 Frog   332 DLESEE-------SASDAGSCLDEDYSSGDEKLEEEYKTKILSFLQDASLDELYLIPHCSHKKAQ 389

  Fly   634 KWREL-PYDKSTWE---EEGDDIQGLRQAIDYYQDLRAVCTSETTQSRSKKSKKGRKSKLKVEDD 694
            |..|| |:  |:||   |:.....||.:  |...|.:.:.             |.|:..:|:.:.
 Frog   390 KITELRPF--SSWESLFEKMTKSNGLSE--DLIWDCQTLI-------------KEREVVMKLMNK 437

  Fly   695 EDRPVKHYTPPPEKPTTDLKKKYE-----DQPAFLEGTGMQLHPYQIEGINWLRYSWGQGIDTIL 754
            .:...:..|    |..|.|.:..|     :||:.: ...:.|.|||..|:|||.......::.||
 Frog   438 CEEISRTLT----KQVTQLTEDGECGWNIEQPSIM-SENLVLKPYQKIGLNWLALLHKHKVNMIL 497

  Fly   755 ADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRA 819
            |||||||||:|.:.||..||..|. .||.||.||.||:.||.|||..|.|....:.|.|.::.|.
 Frog   498 ADEMGLGKTVQAIAFLAHLYVTGD-SGPHLVVVPASTMDNWIREFNQWCPSMNILLYYGSQEERK 561

  Fly   820 VIRENELSFEEGAIRGSKVSRLRTTQYKFNVLLTSYELI---SMDAACLGSIDWAVLVVDEAHRL 881
            .:|.:.|         :||       .:|||::|:|...   :.|.:....:.....|.||.|.|
 Frog   562 HLRYDIL---------NKV-------VEFNVIVTTYNCAISSAEDRSLFRRLKLNFAVFDEGHML 610

  Fly   882 KSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNFL-------SRDKFNDLQAFQGEFAD 939
            |:..:..::.|.:.....:|||||||:||||.||..||||:       |..:...|.:.:.:..|
 Frog   611 KNMSAIRYQHLMTLNARSRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIKRLFSSKAKSTD 675

  Fly   940 ---VSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTKNYEALN 1001
               :.::|::....:::.|.:|||:|::|||.:|.|.:.|...::|..|::.|..:|.|..::::
 Frog   676 EQTIFEKERIAHAKQIMKPFILRRVKSEVLKQLPPKQDKIKFCQMSKKQEQLYSDLLNKLKKSID 740

  Fly  1002 SKSGGGSCSLINIMMDLKKCCNHPYLF-------------------PSAAE-------------- 1033
            :..  .:..|.|:||.|:|..|||.|.                   |:..:              
 Frog   741 ATE--KNSELCNVMMHLRKMANHPLLHRQYYTADRLRTMSKLMLKEPTHCDANPDLIFEDMEVMT 803

  Fly  1034 ---------EATTAAGGLYEI-NSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDF 1088
                     |.||.:  .|:: ..|...:||..:|.|:|..:|.:..||::|||.|.||||:|.|
 Frog   804 DFELHRLCNEFTTLS--QYKLEKELILDSGKFNILEKLLSDIKKKGDRVVLFSQFTMMLDIIEVF 866

  Fly  1089 LEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNP 1153
            |...|::|.|:||....:.|...||.||. ....|:|||||:||||||||.:|:.||::|.|.||
 Frog   867 LRHHQHRYVRLDGKTQISERIHLIDEFNT-DMDIFIFLLSTKAGGLGINLTSANIVILHDIDCNP 930

  Fly  1154 HNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKG 1210
            :||.||..|.||:||..:|.:.:.:.:.::||.:.:::::|:.|...:.....|.:|
 Frog   931 YNDKQAEDRCHRVGQTKEVKVIKLIGKGTIEESMLKISQQKLRLEQDMTTNDTGDEG 987

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..191 CDD:462357
TNG2 <282..422 CDD:227367 37/170 (22%)
PHD1_CHD_II 380..422 CDD:277006 13/68 (19%)
PHD2_CHD_II 440..482 CDD:277007 7/47 (15%)
CD1_tandem_CHD3-4_like 487..557 CDD:349314 13/71 (18%)
CD2_tandem_CHD3-4_like 610..664 CDD:349309 14/66 (21%)
PLN03142 720..>1234 CDD:215601 181/547 (33%)
DUF1087 <1292..1334 CDD:461922
CHDII_SANT-like 1380..1517 CDD:461920
CHDCT2 1757..1902 CDD:462358
smarcad1NP_001015697.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 15..130 26/115 (23%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 172..235 16/79 (20%)
CUE 223..259 CDD:270465 8/52 (15%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 274..351 22/114 (19%)
HepA <471..974 CDD:440319 176/524 (34%)
DEGH box 605..608 2/2 (100%)
Blue background indicates that the domain is not in the aligned region.

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