DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mi-2 and PHF21A

DIOPT Version :9

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:XP_011518459.1 Gene:PHF21A / 51317 HGNCID:24156 Length:688 Species:Homo sapiens


Alignment Length:434 Identity:98/434 - (22%)
Similarity:148/434 - (34%) Gaps:139/434 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   149 LTTYKAFMHHVRPILQKEN---------PKIAAPKL------------------------VMLVA 180
            ||....|:..|||....:|         |.:|||:|                        |.:|.
Human   232 LTPRPNFLPQVRPKPVAQNNIPIAPAPPPMLAAPQLIQRPVMLTKFTPTTLPTSQNSIHPVRVVN 296

  Fly   181 AKWREFCESNPHIQQEGGAAGSGGS--AGQARSVTGDEPEEPRSSRSSRNEKPDDIYEEAVEEEE 243
            .:.....::.|..|.......:.|:  ||         |:..:.|:.|       :.::.|:...
Human   297 GQTATIAKTFPMAQLTSIVIATPGTRLAG---------PQTVQLSKPS-------LEKQTVKSHT 345

  Fly   244 EEEEEEKKPRRKRSGRGKKGRRPSGKVPTLKIKLLGKRKRDSSDEEQDASGASERDSDLEFERML 308
            |.:|::.:.|........|.:|.........:..||....|..:|             ::.:|..
Human   346 ETDEKQTESRTITPPAAPKPKREENPQKLAFMVSLGLVTHDHLEE-------------IQSKRQE 397

  Fly   309 QKSDDSADEKEAPVSSKADNSAPAAQDDGSGA---PVVRKKAKTKIGNKF----KKKNKLKKTKN 366
            :|...:|:    ||.              |||   |..:|.|.|.:.:..    :|:.:..|   
Human   398 RKRRTTAN----PVY--------------SGAVFEPERKKSAVTYLNSTMHPGTRKRGRPPK--- 441

  Fly   367 FPEGEDGEHEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDE------PPEGKWSCPHCEAD 425
                         |..|...|.   |..|.|::.|....|.|..|      .|....|.|     
Human   442 -------------YNAVLGFGA---LTPTSPQSSHPDSPENEKTETTFTFPAPVQPVSLP----- 485

  Fly   426 GGAAEEEDDDEHQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRCSCPPLTGK 490
              :....|.|.|::||.||:..|:||.||:|...||..||:|||.|||.|.|.||||....|  |
Human   486 --SPTSTDGDIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQML--K 546

  Fly   491 AEKIITWRWAQRSNDDGPSTSK------GSKNSNSRVREYFIKW 528
            .|:.|.|          |.|..      ..|.:....::..:||
Human   547 KEEAIPW----------PGTLAIVHSYIAYKAAKEEEKQKLLKW 580

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..190 CDD:285335 14/73 (19%)
PHD1_CHD_II 380..422 CDD:277006 13/47 (28%)
PHD2_CHD_II 440..482 CDD:277007 24/41 (59%)
CHROMO 490..558 CDD:237991 9/45 (20%)
CHROMO 615..667 CDD:214605
SNF2_N 734..1028 CDD:278600
DEXDc 751..907 CDD:238005
Helicase_C 1053..1167 CDD:278689
DUF1087 <1292..1337 CDD:283996
DUF1086 1380..1517 CDD:283992
CHDCT2 1756..1927 CDD:285336
PHF21AXP_011518459.1 ING <382..544 CDD:331088 58/218 (27%)
PHD_PHF21A 498..540 CDD:276998 24/41 (59%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0383
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

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