DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mi-2 and lds

DIOPT Version :9

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_524850.2 Gene:lds / 45894 FlyBaseID:FBgn0002542 Length:1061 Species:Drosophila melanogaster


Alignment Length:1323 Identity:265/1323 - (20%)
Similarity:464/1323 - (35%) Gaps:450/1323 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 SEEDSDFVQHDEEVEYPSTSKRGRKRKEEKQAAKEKESASSGMPSVEDVCSAFSVCNVEIEYSEE 144
            |.|:|::....||....:.|..||.||..: .:|....:.|..||     ||..|.: |.:..||
  Fly     2 SSENSEYYSDKEEDSVVNNSSLGRSRKSSR-LSKSSRLSKSSRPS-----SAGVVID-ETQSEEE 59

  Fly   145 ELQSLTTYKAFMHHVRPILQKENPKIAAPKLVMLVAAKWREFCESNPHIQQEGGAAGSGGSAGQA 209
            |.||..|                                                         |
  Fly    60 ESQSSET---------------------------------------------------------A 67

  Fly   210 RSVTGDEPEEPRSSRSSRNEKPDDIYEEA---------VEEEEEEEEEEKKPRRKRSGRGKKGRR 265
            .|...||.:..::|:.|.:.:.|.:...|         :..:.|:||:|.:.|            
  Fly    68 ESEKSDESDNSQNSQESEDSEDDSVRPSARNTKRKPLGIPSDSEDEEDELEQR------------ 120

  Fly   266 PSGKVPTLKIKLLGKRKRDSSDEEQDASGASERDSDLEFERMLQKSDDSADEKEAPVSSKADNSA 330
              ...|:.::.:.|.|.:|.||:          ||::|:         |.:.:|.|      ..|
  Fly   121 --ALSPSTRMSITGVRPQDLSDD----------DSEIEY---------SDEVQEGP------TEA 158

  Fly   331 PAAQDDGSGAPVVRKKAKTKIGNKFKKKNKLKKTKNFPEGEDGEHEHQDYCEVCQQGGEIILCDT 395
            |.|:      .||.:......||   .:|.|..|.                              
  Fly   159 PTAE------AVVPRYTTQFAGN---IQNDLHSTI------------------------------ 184

  Fly   396 CPRAYHLVCLEPELDEPPEGKWSCPHCEADGGAAEEEDDDEHQEFCRVCKDGGELLCCDSCPSAY 460
                                           |||:.|..|:        ..|.::|...:     
  Fly   185 -------------------------------GAADSEVLDD--------SSGSDVLILSN----- 205

  Fly   461 HTFCLNPPLD----TIPDGDWRCPRCSCPPLTGKAEKIITWRWAQRSNDDGPSTSKGSKNSNSRV 521
                ...|::    |..|........|.||....::.:     :.||: .|.|..|.|||.:...
  Fly   206 ----KETPIEILSSTDDDATTNKENMSGPPFERPSKSL-----SPRSS-AGASVVKTSKNLSQPT 260

  Fly   522 REYFIKWH------NMSYWHCEWVPEVQLDVHHPLMIRSFQRKYDMEEPPKFEESL-----DEAD 575
            .:..:|..      ..|....|....|...|:...|.:..:::..:.:..|..|.:     |:..
  Fly   261 IQAVLKQKTSPAAPRRSRIKSEDQKVVSQVVYDEEMRKLAEKRVQVSDAEKLFEKVAHKLPDKGS 325

  Fly   576 TRYKRIQRHKDKVGMKANDDAEVLEERFYKNGVKPEWLIVQRVINHRTARDGSTMYLVKWRELPY 640
            ...|||...:.::.|   |:..:...|..::.| |...:|:..:|...|....|:          
  Fly   326 QIMKRIDTLRRELAM---DEQWISALRVQQSNV-PAVRVVKPTLNPPRAPSIDTL---------- 376

  Fly   641 DKSTWEEEGDDIQGLRQAIDYYQDLRAVCTSETTQSRSKKSKKGRKSKLKVEDDEDRPVKHYTPP 705
               .|:|..:.:..::..   |...:.:.|....::.:.:|.|.....|     ||      .|.
  Fly   377 ---DWDELSEAVNEIKPV---YTGAQGMATFNNQKALTLESLKDLHVSL-----ED------LPG 424

  Fly   706 PEKPTTDLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYSWGQ------GIDTILADEMGLGKTI 764
            ||....|        |.   |..:.|..:|...:.|:  ||.:      |   ||||:||||||:
  Fly   425 PEVLAED--------PV---GLKVSLMNHQKHALAWM--SWRERKLPRGG---ILADDMGLGKTL 473

  Fly   765 -----------------------------------QTVTFLYSLYKEGHCRGPFLVAVPLSTLVN 794
                                               ::||...|..::...||..||..|.|.|..
  Fly   474 TMISSVLACKNGQEMSEGKDESSDSDSEDDKNKKRKSVTGWKSKGRKDTRRGGTLVVCPASLLRQ 538

  Fly   795 WEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVLLTSYELIS 859
            ||.|.|             .|.||   ::..:....|..|.:|...||    .:::::|:|::::
  Fly   539 WESEVE-------------SKVSR---QKLTVCVHHGNNRETKGKYLR----DYDIVVTTYQIVA 583

  Fly   860 MDAACLGS---IDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNF 921
            .:...|.:   :.|..:::||||.:::::|:....:......|:..|||||:||...:::.||.|
  Fly   584 REHKSLSAVFGVKWRRIILDEAHVVRNHKSQSSLAVCDLRGKYRWALTGTPIQNKELDVYALLKF 648

  Fly   922 LSRDKFNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDV-----LKNMPSKSEFIVRVEL 981
            |....|:||..:: ::.|........||:.::...||||.|..:     |.::|:|...::.:.|
  Fly   649 LRCSPFDDLHTWK-KWIDNKSAGGQNRLNLLMKSLMLRRTKAQLQSDGKLNSLPNKELRLIEISL 712

  Fly   982 SAMQKKFYKFILTK-------------------NYEA---------------------------L 1000
            ...:...|:.::|.                   ||.:                           .
  Fly   713 DKEEMNVYQTVMTYSRTLFAQFLHQRAERETDFNYRSDANKPTYNQIKDPNGAYYKMHEKFARMA 777

  Fly  1001 NSKSGGGSCSLINIMMDLKKCCNHPYLFPSA--AEEATTAAGG-----------LYEINSLT--- 1049
            .||....|..::.:::.|::.|.||.|..:.  .||:.|....           |.::|.|.   
  Fly   778 GSKKEVKSHDILVLLLRLRQICCHPGLIDAMLDGEESQTMGDHSSDSDTPEIDLLAQLNKLAITD 842

  Fly  1050 --------------------------------------------KAAGKLVLLSKMLKQ--LKAQ 1068
                                                        :.:.|:.::.::||.  ||:.
  Fly   843 TSTDGQQSVANAGDDGPPLLPDEARIAKASKNLLKRSNPVFNLHRPSSKINMVIQILKTSILKSS 907

  Fly  1069 NHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGG 1133
            :.:.::.||.|.:||||.|.|..:......::|.|....||:.::.||....|:.|.|||..|||
  Fly   908 DDKAIVVSQWTSVLDILRDHLSKDGVATLSLNGTIPVKNRQDIVNEFNDRNNQKRVLLLSLTAGG 972

  Fly  1134 LGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLT 1198
            :|:||..|:.:::.|..|||..:.||..|.:|:||...|:||:|:..::||:|:..:..:|:.|.
  Fly   973 VGLNLIGANHLLLLDLHWNPQLEAQAQDRIYRVGQKKNVIIYKFMCVDTVEQRIKGLQDKKLDLA 1037

  Fly  1199 HLVVRPGMGGKGANFTKQELDDI 1221
            ..|:   .|.|.:  :|..:||:
  Fly  1038 DGVL---TGAKVS--SKLTIDDL 1055

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..190 CDD:285335 7/51 (14%)
PHD1_CHD_II 380..422 CDD:277006 0/41 (0%)
PHD2_CHD_II 440..482 CDD:277007 5/45 (11%)
CHROMO 490..558 CDD:237991 14/73 (19%)
CHROMO 615..667 CDD:214605 7/51 (14%)
SNF2_N 734..1028 CDD:278600 84/388 (22%)
DEXDc 751..907 CDD:238005 45/193 (23%)
Helicase_C 1053..1167 CDD:278689 40/115 (35%)
DUF1087 <1292..1337 CDD:283996
DUF1086 1380..1517 CDD:283992
CHDCT2 1756..1927 CDD:285336
ldsNP_524850.2 SNF2_N 442..805 CDD:278600 84/388 (22%)
DEXDc 459..634 CDD:238005 46/197 (23%)
HELICc 885..1014 CDD:238034 43/128 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467203
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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