DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mi-2 and Marcal1

DIOPT Version :9

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_608883.1 Gene:Marcal1 / 33709 FlyBaseID:FBgn0031655 Length:755 Species:Drosophila melanogaster


Alignment Length:883 Identity:190/883 - (21%)
Similarity:312/883 - (35%) Gaps:248/883 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   466 NPPLDTIPDGDWRCPRCSCPPLTGKAEKIITWRWAQRSNDDGPSTSKGSKNSNSRVREYFIKWHN 530
            |.|....|...:|.|       ||:.:||         |..||:......:|.....:...:..|
  Fly    57 NQPQAKSPLNFYRSP-------TGEQKKI---------NRSGPTPGDNKSSSFLNALKAIKQTSN 105

  Fly   531 MSYWHCEWVPEVQLDVHHPLMIRSFQRKYDMEEPPKFEESLDEADTRYKRIQRHKDKVGMKANDD 595
            .         |:.....||     :||.....|                     ::|..:..:.|
  Fly   106 R---------ELSRGAAHP-----YQRPNGGNE---------------------RNKPTLSLSSD 135

  Fly   596 AEVLEERFYKNGVKPEWLIVQRVINHRTARDGSTMYLVKWRELPYDKSTWEEEGDDIQGLRQAID 660
            .|           ||..:::...|.       ..:||:.........|.:.|         |.:.
  Fly   136 KE-----------KPVAVLLGNSIT-------CNLYLISTHRFAAQTSGYHE---------QLVT 173

  Fly   661 YYQDLRAVCTSETTQSRSKKSKKGRKSKLKVEDDEDRPVKHYT------------PP--PEKPT- 710
            .::::...|..  .|:|...........||....:.:|..|..            ||  ||:.. 
  Fly   174 VFKNMPTKCYD--GQTRIWSFDLSDYQSLKTHAADLKPYVHMNGIPKKVLDLCGQPPVVPERSVL 236

  Fly   711 TDLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYK 775
            ..::.|..|          ||.|:|.:|:.:.....|:   .::.||||||||.|.:. :...:|
  Fly   237 ASIEPKLAD----------QLMPFQQDGVCFAIAQKGR---IMICDEMGLGKTYQALA-VADYFK 287

  Fly   776 EGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSR 840
            :.   .|.||....||..:|.:......|. ..|.|:      .|:..|:|...|.         
  Fly   288 DD---WPLLVCTTASTRDSWAKHIMDLLPK-VPIHYV------QVLNNNQLYVGEA--------- 333

  Fly   841 LRTTQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYK--LLL 903
                    .||:|||.::......|....:..::.||:|.||::::|........|...|  :||
  Fly   334 --------KVLITSYNMMERHEDKLMQRKFGFIIFDESHTLKNSKAKCTTTAKRLTDQAKRVVLL 390

  Fly   904 TGTPLQNNLEELFHLLNFLSRDKFNDLQAFQGEFAD------------VSKEEQVKRLHEMLGPH 956
            :|||..:...|||..|..:. .||.:...|...:.|            .|..|::|.:..:  .:
  Fly   391 SGTPALSRPLELFTQLQMID-GKFMNFMEFTTRYCDGKQSTFGWDANGQSNLEELKVILHL--KY 452

  Fly   957 MLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKC 1021
            ||||.|.:||   |..:|                    ||.|              .:::|    
  Fly   453 MLRRTKVEVL---PQLAE--------------------KNRE--------------TVVLD---- 476

  Fly  1022 CNHPYLFPSAAEEATTAAGGLYEINSLTKAAGKLVLL--------------SKMLKQLKAQNHRV 1072
               |.|..:.||...|......|:.:....|.:.:||              ...||.|..:..:.
  Fly   477 ---PALVWTNAETKETLDAFNKELKTAKGRATEEILLRFYARTAEVKTRAVCAYLKTLVKEQKKF 538

  Fly  1073 LIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGIN 1137
            :||:....|:|.:.|||.|.:..|.||||......|.:::|.|....:.: |.|||.:|...||.
  Fly   539 IIFAHHRVMMDAISDFLSGLKVHYIRIDGQTRSDHRSDSVDTFQKKSSCK-VALLSLKACNSGIT 602

  Fly  1138 LATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV 1202
            |..|:.::..:.||||....||.||||||||...|:....:..|:.::.:..:.|          
  Fly   603 LTAAEIIVFAELDWNPSTLAQAESRAHRIGQTKPVICRYLIAHNTADDIIWNMLK---------- 657

  Fly  1203 RPGMGGKGANFTKQELDDILRFGTEDLFKEDDKEEAIHYDDKAVAELLDR-----TNRGIEEKES 1262
                       .|||:  :.:.|   :|.| :.::|.|......:..::.     |:..:|.:.:
  Fly   658 -----------NKQEV--LSKVG---IFAE-NLQKATHTAAPTSSHKIEEYFSPSTSTSLEPERN 705

  Fly  1263 WANEYLSSFKVASYATKEEEEEEETEIIKQDAENSDPA 1300
            ...:|.|:..    |.:..|:...||:.|.:...||.|
  Fly   706 SIKQYFSTIP----AKEPPEQNNNTEMTKVNKAESDIA 739

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..190 CDD:285335
PHD1_CHD_II 380..422 CDD:277006
PHD2_CHD_II 440..482 CDD:277007 5/15 (33%)
CHROMO 490..558 CDD:237991 11/67 (16%)
CHROMO 615..667 CDD:214605 6/51 (12%)
SNF2_N 734..1028 CDD:278600 70/307 (23%)
DEXDc 751..907 CDD:238005 40/157 (25%)
Helicase_C 1053..1167 CDD:278689 41/127 (32%)
DUF1087 <1292..1337 CDD:283996 3/9 (33%)
DUF1086 1380..1517 CDD:283992
CHDCT2 1756..1927 CDD:285336
Marcal1NP_608883.1 HARP 160..215 CDD:284784 10/65 (15%)
DEXDc 239..420 CDD:214692 56/222 (25%)
DEXDc 265..394 CDD:238005 40/156 (26%)
Helicase_C 518..632 CDD:278689 39/114 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467215
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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