DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mi-2 and okr

DIOPT Version :9

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_476661.1 Gene:okr / 33507 FlyBaseID:FBgn0002989 Length:784 Species:Drosophila melanogaster


Alignment Length:638 Identity:182/638 - (28%)
Similarity:309/638 - (48%) Gaps:89/638 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   731 LHPYQIEGINWLRYSWGQG-----IDTILADEMGLGKTIQTVTFLYSLYKEG-HCR---GPFLVA 786
            |.|:|.||:.:: |...:|     ...|:|||||||||:|.||.:::|.::| .|:   ...:|.
  Fly   156 LRPHQREGVRFM-YECVEGKRGNFNGCIMADEMGLGKTLQCVTLVWTLLRQGPECKPTINKAIVV 219

  Fly   787 VPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVL 851
            .|.|.:.|||:||..|.            ..|.:....|...:|..||..:...:.:.:....||
  Fly   220 SPSSLVKNWEKEFTKWL------------HGRLLCLPMEGGTKENTIRALEQFSMTSARLGTPVL 272

  Fly   852 LTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELF 916
            |.|||...:.|..|...:..:::.||.||||::.:..::.|.......::||:|||:||:|.|.:
  Fly   273 LISYETFRIYAEILCKYEVGMVICDEGHRLKNSDNLTYQALMGLKTKRRVLLSGTPIQNDLTEYY 337

  Fly   917 HLLNFLSRDKFNDLQAF---------QGEFADVSKEEQ---VKRLHEMLG---PHMLRRLKTDVL 966
            .|:||::.:.......|         :|:..|.:::|:   :::..|::|   ..::||....:.
  Fly   338 SLVNFVNPEMLGTAAVFKRNFESAILRGQNTDSTEQERQRAIEKTQELIGLVDQCIIRRTNQILT 402

  Fly   967 KNMPSKSEFIVRVELSAMQKKFYKFIL-----TKNYEALNSKSGGGSCSLINIMMDLKKCCNHPY 1026
            |.:|.|.|.::..:|:|:|.:.|...|     .::....|.|:   |.:.:..:..|||.|:||.
  Fly   403 KYLPVKFEMVICAKLTAIQLELYTNFLKSDQVRRSLADCNEKA---SLTALADITTLKKICSHPD 464

  Fly  1027 LFPSAAEEATTAAGGL----------YEINSLT-KAAGKLVLLSKMLKQLKAQ-NHRVLIFSQMT 1079
            |.   .|:.|....|.          |:...|. :.:||.:||..||..::|: |.:|::.|..|
  Fly   465 LI---YEKLTAREKGFENSQNVLPSNYKPKDLNPELSGKFMLLDFMLAAIRAEGNDKVVLISNYT 526

  Fly  1080 KMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTV 1144
            :.||:.|......:|.:.|:||.::...|.:.:||||.|.:..|:|:||::|||.|:||..|:.:
  Fly   527 QTLDLFEQLARKRKYGFVRLDGTMSIKKRSKVVDRFNDPESDSFLFMLSSKAGGCGLNLIGANRL 591

  Fly  1145 IIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGK 1209
            .::|.||||.||.||.:|..|.||.....|||.|...|:||::.|....|..|:..::......:
  Fly   592 FMFDPDWNPANDEQAMARVWRDGQKKPCYIYRLVASGSIEEKILQRQTHKKSLSSTIIDNNESAE 656

  Fly  1210 GANFTKQELDDILRFGTEDLFKEDDKEE----AIHYDDKAVAELLDRT-----------NRGIEE 1259
             .:||:.:|.|:..|....|....||.:    ..:...|...|..|.|           |||:.:
  Fly   657 -KHFTRDDLKDLFTFDANILSDTHDKLKCKRCVQNIQMKPPPEDTDCTSHLSQWYHCSNNRGLPD 720

  Fly  1260 K---ESWANEYLSSFKVASYATKEEE-----EEEETEIIKQDAE----NSDPA 1300
            .   ::|.:....|| |..:.::.:|     |||.|:..::..|    :|.||
  Fly   721 NILAQAWMDCKCVSF-VFHHRSQAQEIVPSAEEEATDQPEEKPESRKRSSTPA 772

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..190 CDD:285335
PHD1_CHD_II 380..422 CDD:277006
PHD2_CHD_II 440..482 CDD:277007
CHROMO 490..558 CDD:237991
CHROMO 615..667 CDD:214605
SNF2_N 734..1028 CDD:278600 88/322 (27%)
DEXDc 751..907 CDD:238005 48/159 (30%)
Helicase_C 1053..1167 CDD:278689 46/114 (40%)
DUF1087 <1292..1337 CDD:283996 4/13 (31%)
DUF1086 1380..1517 CDD:283992
CHDCT2 1756..1927 CDD:285336
okrNP_476661.1 SNF2_N 159..466 CDD:278600 88/322 (27%)
DEXDc 179..328 CDD:238005 48/160 (30%)
HELICc 493..622 CDD:238034 49/128 (38%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467213
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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