DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mi-2 and Chd7

DIOPT Version :10

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_001264078.1 Gene:Chd7 / 320790 MGIID:2444748 Length:2986 Species:Mus musculus


Alignment Length:2071 Identity:559/2071 - (26%)
Similarity:834/2071 - (40%) Gaps:580/2071 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 EEELQSLTTYKAFMHHVRPILQKENPKIAAPKLVMLVAAKWREFCESNPHIQQEGGAAGSGGSAG 207
            :...|.|.|......|  |.|.:.:|                    .:||.|.......|..:..
Mouse   499 QPSFQQLPTCPPLQPH--PGLHQSSP--------------------PHPHHQPWAQLHPSPQNTP 541

  Fly   208 QARSVTGDEPEEP-----------RSSRSSRNEKPDDIYEEAVEEEEEEEEEEKKPRRKRSGRGK 261
            |...|....|.||           .|:::::..|.|| |..::|::.::::::||.....:|...
Mouse   542 QKVPVHQHSPSEPFLEKPVPDMTQVSAQNAQLVKSDD-YLPSIEQQPQQKKKKKKNNHIAAGDSS 605

  Fly   262 KG----RRPSGKVPTLKIKLLGKRKRDSSDEEQDASGASERDSDLEFERMLQKSDDSADEKEAPV 322
            ||    ..|.|    ::.:.|.:...|.|.||:......:...|       .|......||:.|.
Mouse   606 KGFGKDDFPGG----VENQELRRNSLDVSQEEKKKKKRPKVKKD-------PKESKEPKEKKEPK 659

  Fly   323 SSKADNSAPAAQDDGSGAPVVRKKAKT---KIGNKFKKKNK--------LKKTKNFPEGEDGEHE 376
            :.||.......::         |||||   |..:..|..||        |||..|..:.|..|:.
Mouse   660 TPKAPKIPKEPKE---------KKAKTVTPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSENS 715

  Fly   377 HQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDEPP------------------EGKWSCPHCE 423
            ..|              .|.|.:     ..||.||.|                  :.::.....|
Mouse   716 DLD--------------KTPPPS-----PAPEEDEDPGVQKRRSSRQVKRKRYTEDLEFKISDEE 761

  Fly   424 ADGGAAEEED------DDEHQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRCPRC 482
            ||...|...|      ..|.||  .|..:|                                   
Mouse   762 ADDADAAGRDSPSNTSQSEQQE--SVDAEG----------------------------------- 789

  Fly   483 SCPPLTGKAEKIITWRWAQRSNDDGPSTSKGSKNSNSRVREYFIKWHNMSYWHCEWVPEVQLDVH 547
               |:   .|||::.|..::..:.|...         .|.|:::|:.|.||.||:|. .|:    
Mouse   790 ---PV---VEKIMSSRLVKKQKESGEEV---------EVEEFYVKYKNFSYLHCQWA-SVE---- 834

  Fly   548 HPLMIRSFQRKYDMEEPPKFEESLDEADTRYKRIQRHKDKVGMKANDDAEVLEERFYKNGVKPEW 612
                        |:|:..:.::          :|:|.|.|.| ::...:|:.::.|     .|::
Mouse   835 ------------DLEKDKRIQQ----------KIKRFKSKQG-QSKFLSEIEDDLF-----NPDY 871

  Fly   613 LIVQRVINHRTARD--GSTM--YLVKWRELPYDKSTWEEEGDDIQGLRQAIDYYQDLRAVCTSET 673
            :.|.|:::...:.|  |..:  |||||..|||:.||||        |:|.||             
Mouse   872 VEVDRIMDFARSTDDRGEPVIHYLVKWCSLPYEDSTWE--------LKQDID------------- 915

  Fly   674 TQSRSKKSKKGRKSKLKVEDDEDRPVKHYTPPPEKPTTDLKKKYEDQPAFLEGTGMQLHPYQIEG 738
                  ::|.....||...:.|...|       |:|..|..||.|....:....  :|..||:||
Mouse   916 ------QTKIEEFEKLMSREPETERV-------ERPPADDWKKSESSREYKNNN--KLREYQLEG 965

  Fly   739 INWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWA 803
            :|||.::|....:.|||||||||||||::||||.:|.:| ..|||||..||||:.||||||..|.
Mouse   966 VNWLLFNWYNMRNCILADEMGLGKTIQSITFLYEIYLKG-IHGPFLVIAPLSTIPNWEREFRTWT 1029

  Fly   804 PDFYCITYIGDKDSRAVIRENELSFEE---GAIRGSKVSRLRTTQYKFNVLLTSYELISMDAACL 865
             :...:.|.|.:.||..|:..|:.|::   ..|:||         |||:.::|::|:|..|...|
Mouse  1030 -ELNVVVYHGSQASRRTIQLYEMYFKDPQGRVIKGS---------YKFHAIITTFEMILTDCPEL 1084

  Fly   866 GSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELFHLLNFLSRDKFNDL 930
            .:|.|..:|:|||||||:...|....|....:.:|:|||||||||.:||||.||:||...:|...
Mouse  1085 RNIPWRCVVIDEAHRLKNRNCKLLEGLKMMDLEHKVLLTGTPLQNTVEELFSLLHFLEPSRFPSE 1149

  Fly   931 QAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTK 995
            ..|..||.|:..||||::|..:|.|.||||||.||.||:..|.|.|:.|||:.:|||:|:.||.|
Mouse  1150 TTFMQEFGDLKTEEQVQKLQAILKPMMLRRLKEDVEKNLAPKEETIIEVELTNIQKKYYRAILEK 1214

  Fly   996 NYEALNSKSGGGSC---SLINIMMDLKKCCNHPYLFPSAAE-------EATTAAGGLYEINSLTK 1050
            |:..|:  .|||..   :|:|.||:|:||||||||...|.|       |...|....:::.::.:
Mouse  1215 NFTFLS--KGGGQANVPNLLNTMMELRKCCNHPYLINGAEEKILEEFKETHNAESPDFQLQAMIQ 1277

  Fly  1051 AAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQEAIDRF 1115
            |||||||:.|:|.:|||..|||||||||.:.||||||:|...:|.||||||.:.|.|||.|||||
Mouse  1278 AAGKLVLIDKLLPKLKAGGHRVLIFSQMVRCLDILEDYLIQRRYPYERIDGRVRGNLRQAAIDRF 1342

  Fly  1116 NAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTR 1180
            :.|.:.:|||||.||||||||||..|||.||:||||||.||:||.:|.|||||:..|.|||.:||
Mouse  1343 SKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQSKSVKIYRLITR 1407

  Fly  1181 NSVEERVTQVAKRKMMLTHLVVRPGMGGKGA-----NFTKQELDDILRFGTEDLFKEDDKEEAIH 1240
            ||.|..:...|..|:.|...|::...|.:.|     ..:|:|::|:||.|......:::.|.:..
Mouse  1408 NSYEREMFDKASLKLGLDKAVLQSMSGRENATNGVQQLSKKEIEDLLRKGAYGALMDEEDEGSKF 1472

  Fly  1241 YDDKAVAELLDRTNRGIEEKESWANEYLSSFKVASYATKEEEEEEETEIIKQDAENSDPAYWVKL 1305
            .::.....||.||:....|.|...    |:|..||:.....         :.|....||.:|.|.
Mouse  1473 CEEDIDQILLRRTHTITIESEGKG----STFAKASFVASGN---------RTDISLDDPNFWQKW 1524

  Fly  1306 LRHHYEQHQEDVGRSLGKGK------RVRKQVNYTDGGVVAADTTRDDSNWQDNGSEYNSEYSAG 1364
            .:    :.:.|:....|:..      |||||...                           |||.
Mouse  1525 AK----KAELDIDALNGRNNLVIDTPRVRKQTRL---------------------------YSAV 1558

  Fly  1365 SDEDGGDDDFDD-QNGAERKAKRRLERRDDRPLPPLLA---RVGGNIEVLGF--------NARQR 1417
            .:::  ..:|.| ::.:|.|...:..|..|:......:   ||..|:.|.|:        :.|.:
Mouse  1559 KEDE--LMEFSDLESDSEEKPCAKPRRPQDKSQGYARSECFRVEKNLLVYGWGRWTDILSHGRYK 1621

  Fly  1418 K--------SFLNAIMRYGM------------------PPQDA-----FNSQWLVRDL-RGKSER 1450
            :        :...||:.|.:                  |..|.     .|...|...: ||:..:
Mouse  1622 RQLTEQDVETICRAILVYCLNHYRGDENIKSFIWDLITPTADGQTRALLNHSGLSAPVPRGRKGK 1686

  Fly  1451 NFKAYVSLFMRHLCEPGADNAETFA----DGVPREGLSRQH-------VLTRIGVMSLIRKKV-- 1502
            ..||..:       :|...:|...|    |.:.:|...::|       ||.|:.::..:|::|  
Mouse  1687 KVKAQST-------QPVVHDAHWLASCNPDALFQEDSYKKHLKHHCNKVLLRVRMLYYLRQEVIG 1744

  Fly  1503 -QEFEHINGYYSMPELILKPCEPVRSALKQDVAALEAPPTGGNVDKSAT-----------TSNSV 1555
             |..:.:.|..|....:..| ||..:.:..|....||       |||..           .|...
Mouse  1745 DQAEKILEGADSSEADVWIP-EPFHAEVPTDWWDREA-------DKSLLIGVFKHGYEKYNSMRA 1801

  Fly  1556 TPA------TSAAPSPAPASEK---------GEDKDKDSEKEKDKTSAEKSEVKQEQEAEEDKKP 1605
            .||      .....:.|.|:|:         |:..:.|.|.|..:....::..|.|.: |....|
Mouse  1802 DPALCFLERVGMPDAKAIAAEQRGTDMLADGGDGGEFDREDEDPEYKPTRAPFKDEID-EFANSP 1865

  Fly  1606 GDVKQENPVEEAAGDTKPSDAE-------------------------------------VKTEVA 1633
            .:.|:|:....::|....|:||                                     :||:..
Mouse  1866 AEDKEESMEVHSSGKHSESNAELGQLYWPNTSTLTTRLRRLITAYQRSYKRQQMRQEALMKTDRR 1930

  Fly  1634 KTEPKEETKDPEVKEEPKTEEK-----EKEKVDDKKPIPPTTVIDDDDDDVMIVKED-------- 1685
            :..|:||.:..|.:.|....||     .:|:.|..:.:....||.|.      ||:.        
Mouse  1931 RRRPREEVRALEAEREAIISEKRQKWTRREEADFYRVVSTFGVIFDP------VKQQFDWNQFRA 1989

  Fly  1686 -GELEKPSASS---------------------PKDQKA-VAAATSAATGATGKGAEDSLEVLKRK 1727
             ..|:|.|..|                     |:|:.. :|:.....|..........:|:| ||
Mouse  1990 FARLDKKSDESLGKYFSCFVAMCRRVCRMPAKPEDEPPDLASLIEPITEERASRTLYRIELL-RK 2053

  Fly  1728 FMFNIADGGFTELHTLWLNEE-KAAVPGREYEIWHR--RHDYWLLAGIVTHGYGRWQDIQNDIRF 1789
            ....:       ||...|::. |...|..:...|..  |||..||.|...||..|..       :
Mouse  2054 IREQV-------LHHPQLSDRLKLCQPSLDLPEWWECGRHDRDLLVGAAKHGVSRTD-------Y 2104

  Fly  1790 AIINEPFKMDVGKGNFLEIKNKF--------------LARRF----KLLEQALVIEEQLRRAAYL 1836
            .|:|:|      :.:||:....|              ||..|    .::..|.|.||:....|. 
Mouse  2105 HILNDP------ELSFLDAHKSFAQNRGASTVPPLNTLAMGFGQTPPVISSAHVHEEKAMEQAE- 2162

  Fly  1837 NLAQDPSH-PAMSLN-----------ARFAEVECLAESHQHLSKESLAG-----NKPANAVLHKV 1884
            ..|::..| ||...:           |:..:.||..|:..  .|..|.|     :..:.:|..|.
Mouse  2163 GKAEECEHSPAKERSDGKEEEEEAGGAKDGKQECEVEASS--VKGELKGVEGSADPGSKSVSEKG 2225

  Fly  1885 LNQLEE--LLSDMKSDVSRLPATLARIPPVAQRLQMSERSILSRLAATAGNASNAA 1938
            ..:.||  |..|.||:.|..|                |...:|| ..|....|||:
Mouse  2226 SEEDEEEKLEDDDKSEESSQP----------------EAGAVSR-GKTFDEESNAS 2264

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..191 CDD:462357 7/47 (15%)
TNG2 <282..422 CDD:227367 34/168 (20%)
PHD1_CHD_II 380..422 CDD:277006 7/59 (12%)
PHD2_CHD_II 440..482 CDD:277007 2/41 (5%)
CD1_tandem_CHD3-4_like 487..557 CDD:349314 15/69 (22%)
CD2_tandem_CHD3-4_like 610..664 CDD:349309 21/57 (37%)
PLN03142 720..>1234 CDD:215601 251/531 (47%)
DUF1087 <1292..1334 CDD:461922 12/47 (26%)
CHDII_SANT-like 1380..1517 CDD:461920 35/193 (18%)
CHDCT2 1757..1902 CDD:462358 44/183 (24%)
Chd7NP_001264078.1 Glutenin_hmw <23..553 CDD:367362 14/75 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 93..146
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 159..180
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 194..246
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 261..307
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 372..412
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 461..792 75/397 (19%)
CD1_tandem_CHD5-9_like 786..850 CDD:349315 21/140 (15%)
CD2_tandem_CHD5-9_like 869..926 CDD:349310 23/83 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 928..949 8/27 (30%)
PLN03142 957..>1556 CDD:215601 274/655 (42%)
DEAH box 1095..1098 2/2 (100%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1566..1590 6/23 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1826..1851 4/24 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2151..2274 32/134 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2366..2393
BRK 2552..2593 CDD:462196
BRK 2631..2675 CDD:197800
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2812..2861
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2924..2986
Blue background indicates that the domain is not in the aligned region.

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