DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mi-2 and Chd2

DIOPT Version :9

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:XP_038968738.1 Gene:Chd2 / 308738 RGDID:1310056 Length:1840 Species:Rattus norvegicus


Alignment Length:1988 Identity:544/1988 - (27%)
Similarity:844/1988 - (42%) Gaps:567/1988 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 KKRKTRKGEEKGRKKKKRKKNESEEDSDFVQHDEEVEYPST--SKRGRKRKEEKQAAKEKESASS 120
            :::.:....|:........::|||:.||          |.:  ........|..::..|.||.|:
  Rat    30 EEKLSHSASEEASASDSGSQSESEQGSD----------PGSGHGSESNSSSESSESQSESESESA 84

  Fly   121 GMPSVEDVCSAFSVCNVEIEYSEEELQSLTTYKAFMHHVRPILQKENPKIAAPK-LVMLVAAKWR 184
            |..|                                   :|:|.:...|.|:.| .:..|...|.
  Rat    85 GSKS-----------------------------------QPVLPEAKEKPASKKERIADVKKMWE 114

  Fly   185 EFCE--------------SNPHIQQEGGAAGSGGSAGQARSVTGDEPEEPRSSRSSRNEKPDDIY 235
            |:.:              |..:|::|   |.||..:|..:            .|..|..|..:.:
  Rat   115 EYPDVYGVRRSNRSRQEPSRFNIKEE---ASSGSESGSPK------------RRGQRQLKKQEKW 164

  Fly   236 EEAVEEEEEE-------EEEEKKPRRKRSGRGKKGRRPSGK--VPTLKIK-----LLGKRKRDSS 286
            ::...|:::|       |.|:||         .|.|||..:  ||..::|     ..||||:..|
  Rat   165 KQDPSEDDQEQGSSAESEAEQKK---------VKARRPIPRRTVPKPQVKKQPKIQRGKRKKQES 220

  Fly   287 DEEQDASGASERDSDLEFERMLQKSDDSADEKEAPVSSKADNSAPAAQDDGSGAPVVRKKAKTKI 351
                                    |||..|:.|||                              
  Rat   221 ------------------------SDDDDDDDEAP------------------------------ 231

  Fly   352 GNKFKKKNKLKKTKN--FPEGEDGEHEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDEPPE 414
                |::.:.:..||  :.|.:|.|.:..|..|:.   ||                         
  Rat   232 ----KRQTRRRAAKNVSYKEDDDFETDSDDLIEMT---GE------------------------- 264

  Fly   415 GKWSCPHCEADGGAAEEEDDDEHQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGDWRC 479
                        |..|::|:.|                           .:...||:        
  Rat   265 ------------GVDEQQDNSE---------------------------TIEKVLDS-------- 282

  Fly   480 PRCSCPPLTGKAEKIITWRWAQRSNDDGPSTSKGSKNSNSRVREYFIKWHNMSYWHCEWVPEVQL 544
             |......||.:..:    :|..:|.| ||....::.....: :|.|||...||.|..|..|..|
  Rat   283 -RLGKKGATGASTTV----YAVEANGD-PSGDFDTEREEGEI-QYLIKWKGWSYIHSTWESEESL 340

  Fly   545 DVHHPLMIRSFQRKYDMEEPPKFEESLDEADTRYKRIQRHKDKVGMKANDDAEVLE-ERFYKNGV 608
            ..         |:...:::...|::..||.          |..:|..:.:|.|... ::...:.:
  Rat   341 QQ---------QKVKGLKKLENFKKKEDEI----------KQWLGKVSPEDVEYFNCQQELASEL 386

  Fly   609 KPEWLIVQRVINHRTARD--GST---------------MYLVKWRELPYDKSTWEEEGDDIQGLR 656
            ..::.||:|||..:|::.  |.|               .||.||..|||.:.:||:|....:..:
  Rat   387 NKQYQIVERVIAVKTSKSALGQTDFPAHSRKPAPSNEPEYLCKWMGLPYSECSWEDEALIGKKFQ 451

  Fly   657 QAIDYYQDLRAVCTSETTQSRSKKSKKGRKSKLKVEDDEDRPVKHYTPPPEKPTTDLKKKYEDQP 721
            ..||.:....   .|:|..:|..|:.|                       ::|.....||   ||
  Rat   452 SCIDSFHSRN---NSKTIPTRECKALK-----------------------QRPRFVALKK---QP 487

  Fly   722 AFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVA 786
            |:|.|..::|..||:||:|||.:||.:....||||||||||||||::||..|:.:....||||:.
  Rat   488 AYLGGENLELRDYQLEGLNWLAHSWCKSNSVILADEMGLGKTIQTISFLSYLFHQHQLYGPFLIV 552

  Fly   787 VPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIRGSKVSRLRTTQYKFNVL 851
            ||||||.:|:||||:|||:...:.||||..||..|||.|....:            |.:.|||.|
  Rat   553 VPLSTLTSWQREFEIWAPEVNVVVYIGDLMSRNTIREYEWIHSQ------------TKRLKFNAL 605

  Fly   852 LTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEELF 916
            :|:||::..|...||||:||.|.||||||||::.|..::.|..:...::||:|||||||:|:||:
  Rat   606 ITTYEILLKDKTVLGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELW 670

  Fly   917 HLLNFLSRDKFNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVEL 981
            .||:|:..:||...:.|:.:... .:|...:.||::|.|.:|||:|.||.|::|:|.|.|:|||:
  Rat   671 SLLHFIMPEKFEFWEDFEEDHGK-GRENGYQSLHKVLEPFLLRRVKKDVEKSLPAKVEQILRVEM 734

  Fly   982 SAMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLF--PSAAEEATTAAGGLYE 1044
            ||:||::||:|||:||:||...:.|.:...:||:|:|||||||.||.  |..:|..|    |...
  Rat   735 SALQKQYYKWILTRNYKALAKGTRGSTSGFLNIVMELKKCCNHCYLIRAPEDSERET----GQEV 795

  Fly  1045 INSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQ 1109
            :.||.:::|||:||.|:|.:|:.:.:||||||||.:|||||.::|..:.|.::|:||.|.|.:|:
  Rat   796 LQSLIRSSGKLILLDKLLTRLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRK 860

  Fly  1110 EAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMI 1174
            :|:|.|||.|::.|.|||||||||||||||:||||:|:||||||.||:||.:|||||||..:|.|
  Rat   861 QALDHFNADGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNI 925

  Fly  1175 YRFVTRNSVEERVTQVAKRKMMLTHLVVR-----------PGMGGKGAN-FTKQELDDILRFGTE 1227
            ||.||:.:|||.:.:.||:||:|.|||::           ...|...:| |.|:||..||:||.|
  Rat   926 YRLVTKGTVEEEIIERAKKKMVLDHLVIQRMDTTGRTVLENNSGRSNSNPFNKEELTAILKFGAE 990

  Fly  1228 DLFKEDDKEEAIHYDDKAVAELL----DRTNRGIEEKESWANEYLSSFKVASYATKEEEEEEE-- 1286
            |||||.:.||: ...:..:.|:|    .|.|   |...|..:|.||.||||::||.|:|||.|  
  Rat   991 DLFKEIEGEES-EPQEMDIDEILRLAETREN---EVSTSATDELLSQFKVANFATMEDEEELEER 1051

  Fly  1287 -----TEIIKQDAENSDPAYWVKLLRHHYEQHQEDVGRSLGKGKRVRKQVNYTDGGVVAADTTRD 1346
                 .|||.::...          :...|:.|::: ..:....|:|            :.|.:.
  Rat  1052 PHKDWDEIIPEEQRK----------KVEEEERQKEL-EEIYMLPRIR------------SSTKKA 1093

  Fly  1347 DSNWQDNGSEYNSEYSAGSDEDGGDDDFDDQNGAERKAKRRLERRDDRPLPPLLARVGGNIEVLG 1411
            .:|..|:.:|...:....|..:...||.||....:|:.:.|..|:|               .|.|
  Rat  1094 QTNDSDSDTESKRQAQRSSASESETDDSDDDKKPKRRGRPRSVRKD---------------LVEG 1143

  Fly  1412 FNARQRKSFLNAIMRYGMP-------PQDAFNSQWLVRDLRGKSERNFKAYVSLFMRHLCEPGAD 1469
            |...:.:.|:.|..::|:|       .:||......|.||:...|....:.||. |:...|...:
  Rat  1144 FTDAEIRRFIKAYKKFGLPLERLECIARDAELVDKSVADLKRLGELVHNSCVSA-MQEYEEQLKE 1207

  Fly  1470 NAETFADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELILKPCEPVRSALKQDVA 1534
            ||........|.|.:.:....::.|.|:|:.: :|||.:  :.|:|   :.|.|..:..|...|.
  Rat  1208 NASEGKGPGKRRGPTIKISGVQVNVKSIIQHE-EEFEML--HKSIP---VDPEEKKKYCLTCRVK 1266

  Fly  1535 ALEAPPTGGNVDKSATTSN------------SVTPATSAAPS--PAPASEKGEDKD--------- 1576
            |.......|..|.|.....            ...|.......  |....:|.:.|.         
  Rat  1267 AAHFDVEWGVEDDSRLLLGIYEHGYGNWELIKTDPELKLTDKILPVETDKKPQGKQLQTRVDYLL 1331

  Fly  1577 ----KDSEKEKDKTSAEKSEVKQEQ-EAEEDKKPGDVKQE------------NPVEEAAGDTKPS 1624
                |..||:...||.|::::|:.: ..:::.|...:|.|            ||.||  |:.|..
  Rat  1332 KLLRKGLEKKGTVTSGEEAKLKKRKPRVKKENKAPRLKDEHGLELSSPRHSDNPSEE--GEVKDD 1394

  Fly  1625 DAEVKTEVAKTEPKEETKDPEVKEEP------KTEEKEKEKVDDKK------------------- 1664
            ..| |:...|.:.|:|.|  |.||:|      :..:|||:|..|||                   
  Rat  1395 GLE-KSPTKKKQKKKENK--ENKEKPVSSRKDREGDKEKKKSKDKKEKVKGGDAKSSSKSKRSQG 1456

  Fly  1665 PI------PPTTVIDDDDDDV-----MIVKED--------GELEKPSASSPKDQKAVAAATSAAT 1710
            |:      .|..:.:|:|||:     .|.||.        .:|:||.                  
  Rat  1457 PVHITAGSEPVPIGEDEDDDLDQETFSICKERMRPVKKALKQLDKPD------------------ 1503

  Fly  1711 GATGKGAEDSLEVLKRKFMFNIADGGFTELHTLWLNEEKAAVPGREYEIWHRRHDYWLLAGIVTH 1775
              .|...::.|| ..|..:..|.| ...|....:..:|       ..::|  |.:.|:..     
  Rat  1504 --KGLNVQEQLE-HTRSCLLKIGD-RIAECLRAYSEQE-------HIKLW--RRNLWIFV----- 1550

  Fly  1776 GYGRWQDIQNDIRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLL--EQALVIEEQLRRAAYLNL 1838
                                       ..|.|...:.|.:.:|:.  :::...|||.::...|. 
  Rat  1551 ---------------------------SKFTEFDARKLHKLYKMAHKKRSQEEEEQKKKDDTLG- 1587

  Fly  1839 AQDPSHPAMSLNARFAEVECLAESHQHLSKESLAGNKP 1876
            .:.|..|..|.::|.:   .:::||   :..:|...||
  Rat  1588 GKKPFRPEASGSSRDS---LISQSH---ASHNLHPQKP 1619

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..190 CDD:285335 8/66 (12%)
PHD1_CHD_II 380..422 CDD:277006 3/41 (7%)
PHD2_CHD_II 440..482 CDD:277007 2/41 (5%)
CHROMO 490..558 CDD:237991 16/67 (24%)
CHROMO 615..667 CDD:214605 19/68 (28%)
SNF2_N 734..1028 CDD:278600 142/293 (48%)
DEXDc 751..907 CDD:238005 75/155 (48%)
Helicase_C 1053..1167 CDD:278689 70/113 (62%)
DUF1087 <1292..1337 CDD:283996 4/44 (9%)
DUF1086 1380..1517 CDD:283992 33/143 (23%)
CHDCT2 1756..1927 CDD:285336 20/123 (16%)
Chd2XP_038968738.1 CD1_tandem_CHD1-2_like 272..356 CDD:349313 23/134 (17%)
CD2_tandem_CHD1-2_like 389..460 CDD:349308 20/70 (29%)
DEXHc_CHD2 477..713 CDD:350812 113/251 (45%)
PLN03142 481..>1034 CDD:215601 274/576 (48%)
CDH1_2_SANT_HL1 1143..1231 CDD:408175 20/88 (23%)
DUF4208 1484..1566 CDD:404744 20/144 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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