DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Mi-2 and Hells

DIOPT Version :10

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_001099841.1 Gene:Hells / 294071 RGDID:1309820 Length:837 Species:Rattus norvegicus


Alignment Length:873 Identity:268/873 - (30%)
Similarity:411/873 - (47%) Gaps:171/873 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   537 EWVPEVQLDVHHPLMIRSFQRKYDMEEPPKFEESLDEA---------DTRYKRIQRHKDKVGMKA 592
            |...:.:..|..|.|:.. :.:.:.|...|..:.|:||         :.||:|:|...:|..:.:
  Rat    16 EMAEQTEPAVITPAMLEE-EEQLEAEGLEKERKMLEEARKSWDRESTEIRYRRLQHLLEKSNIYS 79

  Fly   593 NDDAEVLEERFYKNGVKPEWLIVQ----RVINHRTARDGSTMYLVKWRELPYDKSTWEEEGDDIQ 653
            ......:|::..:...|.|.|..:    :|...:...||:                  ||...::
  Rat    80 KFLLTKMEQQQLEEQKKKEKLEKKKRSLKVTEGKNLIDGN------------------EENTVMK 126

  Fly   654 GLRQAIDYYQDLRAVCTSETTQSRSKKSK-----KGRKSKLKVED-----DEDRPVKHYTPPPEK 708
            ..|...|...::..|.:.|...|.:||.|     ....:.|.|||     |.:..:|.......:
  Rat   127 KKRGREDESYNISEVMSKEEILSVAKKHKDNEDENSSTTNLCVEDLQKNKDSNSMIKDRLSQTVR 191

  Fly   709 PTT----DLKKKYEDQPAFLEG----TGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQ 765
            ..:    |..:|...||...:.    ||..:..||:||:.|||..|..||:.|||||||||||:|
  Rat   192 QNSKFFFDPVRKCNGQPVPFQQPKHFTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQ 256

  Fly   766 TVTFLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEE 830
            .:..:..:.:.| ..|||||..|||||.||..||:.:.|:...:.|.|::..|..:.:|      
  Rat   257 CIATIALMIQRG-VPGPFLVCGPLSTLPNWMAEFKRFTPEIPTLLYHGNRQERRKLVKN------ 314

  Fly   831 GAIRGSKVSRLRTTQYKFNVLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSY 895
                   :.:.:.|.....|::||:|:...|...|....|..|:|||.||:|:.:.:..|.|..:
  Rat   315 -------IHKRQGTLQIHPVVITSFEIAMRDQNALQHCYWKYLIVDEGHRIKNMKCRLIRELKRF 372

  Fly   896 TIAYKLLLTGTPLQNNLEELFHLLNFLSRDKFNDLQAFQ--------GEFAD--VSKEEQ---VK 947
            ....|||||||||||||.||:.|||||..|.|:||::|:        .|.|:  ::||.:   :.
  Rat   373 NADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDDLKSFESWFDITSLSETAEDIIAKEREQNVLH 437

  Fly   948 RLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFYKFILTK----------------- 995
            .||::|.|.:|||||:||...:|.|.|.:|...|...|:.||..|:.:                 
  Rat   438 MLHQILTPFLLRRLKSDVALEVPPKREVVVYAPLCNKQEIFYTAIVNRTIANMFGSCEKETVELS 502

  Fly   996 -------------NYEALNSKSG---------------------GG-------SCSLINIMMDLK 1019
                         ||..|:....                     |.       :..|.||||.|:
  Rat   503 PTGRPKRRSRKSINYSELDQFPSELEKLISQIQPEVKRERTVVEGNIPIESEVNLKLQNIMMLLR 567

  Fly  1020 KCCNHPYLFPSAAEEATTAAGGLYEIN-SLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLD 1083
            |||||||:.....:..|..    ::|: .|...:||.::|.:||.:||.:.|:||:|||||.|||
  Rat   568 KCCNHPYMIEYPIDPVTQE----FKIDEELVTNSGKFLILDRMLPELKKRCHKVLVFSQMTSMLD 628

  Fly  1084 ILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYD 1148
            ||.|:.....:.:.|:||.::.:.|::.|..||. ..:.|:||:|||||||||||..||||||||
  Rat   629 ILMDYCHLRNFTFSRLDGSMSYSEREKNIYSFNT-DPEVFLFLVSTRAGGLGINLTAADTVIIYD 692

  Fly  1149 SDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVV-----RPGMGG 1208
            |||||.:|:||..|.|||||...|::||.||.|::::::.:.|..|..|..|::     :.|..|
  Rat   693 SDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTIDQKIVERAAAKRKLEKLIIHKNHFKGGQSG 757

  Fly  1209 --KGANF-TKQELDDILRFGTEDLFKEDDKEEAIHYDDKAVAELLDRT--------NRGIEEKES 1262
              :..|| ..:||.::|:....:...:..:|:.|  .|:.:..||||:        :|.|:||  
  Rat   758 LSQSKNFLDAKELMELLKSRDYEREVKGSREKVI--SDEDLELLLDRSDLIDQMKASRPIKEK-- 818

  Fly  1263 WANEYLSSFKVASYATKEEEEEEETEII 1290
                 ...||:.     |..|:...|.:
  Rat   819 -----TGIFKIL-----ENSEDSSAECL 836

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..191 CDD:462357
TNG2 <282..422 CDD:227367
PHD1_CHD_II 380..422 CDD:277006
PHD2_CHD_II 440..482 CDD:277007
CD1_tandem_CHD3-4_like 487..557 CDD:349314 4/19 (21%)
CD2_tandem_CHD3-4_like 610..664 CDD:349309 9/57 (16%)
PLN03142 720..>1234 CDD:215601 213/597 (36%)
DUF1087 <1292..1334 CDD:461922
CHDII_SANT-like 1380..1517 CDD:461920
CHDCT2 1757..1902 CDD:462358
HellsNP_001099841.1 DEXHc_HELLS_SMARCA6 219..452 CDD:350767 96/246 (39%)
PLN03142 220..>797 CDD:215601 212/597 (36%)
Blue background indicates that the domain is not in the aligned region.

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