DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mi-2 and fft3

DIOPT Version :10

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:NP_593617.1 Gene:fft3 / 2541531 PomBaseID:SPAC25A8.01C Length:922 Species:Schizosaccharomyces pombe


Alignment Length:608 Identity:195/608 - (32%)
Similarity:276/608 - (45%) Gaps:134/608 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   703 TPPPEKPTTDLKKKYEDQPAFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTV 767
            |.||...:.|:|                |..|||.|||||...:...:..|||||||||||.||:
pombe   375 TTPPASFSPDIK----------------LQDYQIIGINWLYLLYELKLAGILADEMGLGKTCQTI 423

  Fly   768 TFLYSLYKEGHCRGPFLVAVPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGA 832
            .| :||..:.:..||.||..|.||:.||.|||..:.|......|.|.:..|..|||         
pombe   424 AF-FSLLMDKNINGPHLVIAPASTMENWLREFAKFCPKLKIELYYGSQVEREEIRE--------- 478

  Fly   833 IRGSKVSRLRTTQYKFNVLLTSYELIS---MDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNS 894
                   |:.:.:..:||:||:|.|.:   .|...|.:..:.|.|.||.|.||:..|:.:|.|.|
pombe   479 -------RINSNKDSYNVMLTTYRLAATSKADRLFLRNQKFNVCVYDEGHYLKNRASERYRHLMS 536

  Fly   895 YTIAYKLLLTGTPLQNNLEELFHLLNFLSRDKFN-DLQAFQGEF-------ADVSK----EEQVK 947
            ....:::|||||||||||:||..||.|:....|: .|::....|       :|..:    |::|.
pombe   537 IPADFRVLLTGTPLQNNLKELISLLAFILPHVFDYGLKSLDVIFTMKKSPESDFERALLSEQRVS 601

  Fly   948 RLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRVELSAMQKKFY------------------KFILT 994
            |...|:.|.:|||.|:.||..:|.|:..|...|.|..:::.|                  |..|.
pombe   602 RAKMMMAPFVLRRKKSQVLDALPKKTRIIEFCEFSEEERRRYDDFASKQSVNSLLDENVMKTNLD 666

  Fly   995 KNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLF--------------PSAAEEATTAAGGLY-- 1043
            .|......||..|.     :::.|:|..:||.||              ....|.....|..||  
pombe   667 TNANLAKKKSTAGF-----VLVQLRKLADHPMLFRIHYKDDILRQMAKAIMNEPQYKKANELYIF 726

  Fly  1044 -------------------EINSLT------KAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLD 1083
                               .|||..      ..|.|:..|.|:|........||::|||.|::||
pombe   727 EDMQYMSDIELHNLCCKFPSINSFQLKDEPWMDATKVRKLKKLLTNAVENGDRVVLFSQFTQVLD 791

  Fly  1084 ILEDFLEGEQYKYERIDGGITGTLRQEAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYD 1148
            ||:..::....|:.|.||......||:.||:|.|..:.. ||||||:|||.|||||.|:.||:||
pombe   792 ILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFYADESIN-VFLLSTKAGGFGINLACANMVILYD 855

  Fly  1149 SDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANF 1213
            ..:||.:|:||..||||:||..:|.:|:||.::::||.:.::|..|:                  
pombe   856 VSFNPFDDLQAEDRAHRVGQKKEVTVYKFVVKDTIEEHIQRLANAKI------------------ 902

  Fly  1214 TKQELDDILRFGTEDLFKEDDKE 1236
               .||..|....|.:..|||.:
pombe   903 ---ALDATLSGNAETVEAEDDDD 922

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..191 CDD:462357
TNG2 <282..422 CDD:227367
PHD1_CHD_II 380..422 CDD:277006
PHD2_CHD_II 440..482 CDD:277007
CD1_tandem_CHD3-4_like 487..557 CDD:349314
CD2_tandem_CHD3-4_like 610..664 CDD:349309
PLN03142 720..>1234 CDD:215601 188/587 (32%)
DUF1087 <1292..1334 CDD:461922
CHDII_SANT-like 1380..1517 CDD:461920
CHDCT2 1757..1902 CDD:462358
fft3NP_593617.1 HepA 275..904 CDD:440319 188/588 (32%)
Blue background indicates that the domain is not in the aligned region.

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