DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mi-2 and chd5

DIOPT Version :9

Sequence 1:NP_001014591.1 Gene:Mi-2 / 40170 FlyBaseID:FBgn0262519 Length:1983 Species:Drosophila melanogaster
Sequence 2:XP_031761592.1 Gene:chd5 / 100487004 XenbaseID:XB-GENE-955461 Length:1953 Species:Xenopus tropicalis


Alignment Length:2092 Identity:1109/2092 - (53%)
Similarity:1372/2092 - (65%) Gaps:322/2092 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EENDDNFQEEEEAQEDNAPAAELSNDSDAPLKPNQNDEDDDYDPEDSRRKKKGKKRKTRKGEEKG 69
            ||:.....|.||..|:.|...|..|.....|.|               ::||.||.|    |.|.
 Frog     8 EEDPIEEMENEEMSEEEAGGMEAINFFAEELPP---------------KRKKSKKSK----EGKL 53

  Fly    70 RKKKKRKKNESEEDSDFVQHDEEVEYPSTS------------KRGRKRKEEKQAAKEK----ESA 118
            .|.|:|||..|  |:|..::::|:|..|.|            |:.:::||:|...|:|    ::.
 Frog    54 SKTKRRKKEGS--DADVSENEDELEEKSESEGSDYAPNKKKKKKLKEKKEKKTKRKKKDDDEDNE 116

  Fly   119 SSGM---PSVEDVCSAFSVCNVEIEYSEEELQSLTTYKAFMHHVRPILQKENPKIAAPKLVMLVA 180
            ..|:   .|...:...:.:.||:..:|||:..:||.||||...:||::.|:||||...|::.::.
 Frog   117 EGGIKEPKSSAQLMEEWGLDNVDYAFSEEDYHTLTNYKAFSQFLRPLIAKKNPKIPMSKMMTVLG 181

  Fly   181 AKWREFCESNPHIQQEGGAAGSGGSAGQARS--------VTGDEPEEPRSSRSSRNEKPDDIYEE 237
            ||||||..:|| ::....||.:...|....:        |:..:|.:|...|.::.         
 Frog   182 AKWREFSSNNP-LKGSSAAAAAAAVAAAVETVAVAPPILVSPPQPVQPAPIRKAKT--------- 236

  Fly   238 AVEEEEEEEEEEKKPR-RKRSGRGKKGRRPS--GKVPTLKIKLLG---KRKRDSSDEEQDASGAS 296
                     :|.|.|. ||:|...|..::.|  .|:..||.|..|   |||:.||.||.:     
 Frog   237 ---------KEGKGPGVRKKSKPSKDSKKKSKVKKMTNLKFKFGGMASKRKKGSSSEEDE----- 287

  Fly   297 ERDSDLEFERMLQKSDDSADEKEAPVSSKADNSAPAAQDDGSGAPVVRKKAKTKIGNKFKKKNKL 361
            ..:||.          |||....:.|  ::|.||      |.|          |.|.:.|||.|:
 Frog   288 REESDF----------DSASINSSSV--RSDISA------GLG----------KRGKRVKKKKKV 324

  Fly   362 KKTKNFPEGEDGEHEHQDYCEVCQQGGEIILCDTCPRAYHLVCLEPELDEPPEGKWSCPHC---- 422
            :      ||:..|.:|||||||||||||||||||||||||||||:|||::.||||||||||    
 Frog   325 E------EGDGYETDHQDYCEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEG 383

  Fly   423 -----------EADGGAAEEEDDDEHQEFCRVCKDGGELLCCDSCPSAYHTFCLNPPLDTIPDGD 476
                       |.||...|||::|:|.||||||||||||||||:|||:||..||||||..||:|:
 Frog   384 IQWEPKEDDEDEEDGAEEEEEEEDDHMEFCRVCKDGGELLCCDTCPSSYHLHCLNPPLPEIPNGE 448

  Fly   477 WRCPRCSCPPLTGKAEKIITWRWAQRSNDDG-----------PSTSKGSKNSNSRVREYFIKWHN 530
            |.||||:||||.||.::|:.|.|.:.....|           |...:|...     ||:|:||..
 Frog   449 WLCPRCTCPPLKGKVQRILHWVWREPPPPSGFPVDIDPLMPPPKPVEGIPE-----REFFVKWAG 508

  Fly   531 MSYWHCEWVPEVQLDVHHPLMIRSFQRKYDMEEPPKFE-ESLDEADTRYKRIQRHKDKVGMKAND 594
            :|||||.|..|:||:::|.:|.|::|||.||::||.:: .|.||.....||  |:||.:..|   
 Frog   509 LSYWHCSWAKELQLELYHTVMFRNYQRKNDMDDPPPYDYGSGDEEGKSEKR--RNKDPLYAK--- 568

  Fly   595 DAEVLEERFYKNGVKPEWLIVQRVINHRTARDGSTMYLVKWRELPYDKSTWEEEGDDI---QGLR 656
                :||:||:.|:||||:::.|::||...:.|...||:||::||||:.|||.:..||   :.::
 Frog   569 ----MEEKFYRYGIKPEWMMIHRIMNHSFDKKGDVHYLIKWKDLPYDQCTWEIDIIDIPDYENMK 629

  Fly   657 QAIDYYQDLRAVCTSETTQSRSKKSKKGRKSKLKVEDDEDRPVKHYTPPPEKPTTDLKKKYEDQP 721
            ||   |.|.|.:...|..:....|:||.:..||:             .||..|..|...|::.||
 Frog   630 QA---YWDHRELMLGEDARPLRFKNKKTKDEKLE-------------KPPLAPIVDPTVKFDKQP 678

  Fly   722 AFLEGTGMQLHPYQIEGINWLRYSWGQGIDTILADEMGLGKTIQTVTFLYSLYKEGHCRGPFLVA 786
            .:::.||..|||||:||:||||:||.||.|||||||||||||:||:.||||||||||.:||:||:
 Frog   679 WYIDSTGGTLHPYQLEGLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPYLVS 743

  Fly   787 VPLSTLVNWEREFELWAPDFYCITYIGDKDSRAVIRENELSFEEGAIR-GSKVSRL-RTTQYKFN 849
            .||||::|||||||:|||:||.:||.|||||||||||||.|||:.||: |.||.|: :..|.||:
 Frog   744 APLSTIINWEREFEMWAPEFYVVTYTGDKDSRAVIRENEFSFEDNAIKSGKKVFRMKKEAQIKFH 808

  Fly   850 VLLTSYELISMDAACLGSIDWAVLVVDEAHRLKSNQSKFFRILNSYTIAYKLLLTGTPLQNNLEE 914
            |||||||||::|.|.||||:||.||||||||||:|||||||:||||.|.||||||||||||||||
 Frog   809 VLLTSYELITIDHAILGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEE 873

  Fly   915 LFHLLNFLSRDKFNDLQAFQGEFADVSKEEQVKRLHEMLGPHMLRRLKTDVLKNMPSKSEFIVRV 979
            ||||||||:.::||:|..|..||||:|||:|:|:||::||||||||||.||.||||:|:|.||||
 Frog   874 LFHLLNFLTPERFNNLDGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPAKTELIVRV 938

  Fly   980 ELSAMQKKFYKFILTKNYEALNSKSGGGSCSLINIMMDLKKCCNHPYLFPSAAEEATTAAGGLYE 1044
            |||.||||:||||||:|:||||||.||...||:|||||||||||||||||.||.||.....|.|:
 Frog   939 ELSQMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAPVLPNGSYD 1003

  Fly  1045 INSLTKAAGKLVLLSKMLKQLKAQNHRVLIFSQMTKMLDILEDFLEGEQYKYERIDGGITGTLRQ 1109
            .|||.|::|||:||.||||:||...||||||||||||||:||||||.|.||||||||||||.|||
 Frog  1004 GNSLVKSSGKLMLLQKMLKKLKDGGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGITGGLRQ 1068

  Fly  1110 EAIDRFNAPGAQQFVFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQANKVMI 1174
            ||||||||||||||.||||||||||||||||||||||||||||||||||||||||||||..||||
 Frog  1069 EAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMI 1133

  Fly  1175 YRFVTRNSVEERVTQVAKRKMMLTHLVVRPGMGGKGANFTKQELDDILRFGTEDLFKED------ 1233
            ||||||.|||||:||||||||||||||||||:|.|..:.|||||||||:||||:|||:|      
 Frog  1134 YRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKSGSMTKQELDDILKFGTEELFKDDVEADHN 1198

  Fly  1234 --------------DKEEA--IHYDDKAVAELLDRTNRGIEEKE-SWANEYLSSFKVASYATKEE 1281
                          |.|::  |||||.|:::||||.....|:.| ...||||||||||.|..:||
 Frog  1199 CGTVTIYKKTGDNKDVEDSSVIHYDDAAISKLLDRNQDATEDTEIQNMNEYLSSFKVAQYVVREE 1263

  Fly  1282 E--EEEETEIIKQDAENSDPAYWVKLLRHHYEQHQEDVGRSLGKGKRVRKQVNYTDGGVVAADTT 1344
            :  ||.|.|||||: ||.||.||.|||||||||.|||:.|:||||||:||||||.       |.:
 Frog  1264 DGVEEVEREIIKQE-ENVDPDYWEKLLRHHYEQQQEDLARNLGKGKRIRKQVNYN-------DAS 1320

  Fly  1345 RDDSNWQDNGSEYNSEYSAGSDEDGGDDDFDDQ-NGAERKAKRRLERRDDRPLPPLLARVGGNIE 1408
            ::|..|||:.|:..||||.||:::  |:||::: .|..|:::|:|:...|:||||||||||||||
 Frog  1321 QEDQEWQDDLSDNQSEYSVGSEDE--DEDFEEKPEGGRRQSRRQLKSDRDKPLPPLLARVGGNIE 1383

  Fly  1409 VLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFMRHLCEPGADNAET 1473
            ||||||||||:|||||||:||||||||||.|||||||||:|:.|:||||||||||||||||.|||
 Frog  1384 VLGFNARQRKAFLNAIMRWGMPPQDAFNSNWLVRDLRGKTEKEFRAYVSLFMRHLCEPGADGAET 1448

  Fly  1474 FADGVPREGLSRQHVLTRIGVMSLIRKKVQEFEHINGYYSMPELI-----LKPC-EPVRSALKQD 1532
            ||||||||||||||||||||||||:||||||||.:||.||.|:||     .|.| :.|.|.....
 Frog  1449 FADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEQVNGKYSTPDLIPESVQNKKCFDMVSSDPNTP 1513

  Fly  1533 VAALEAPPTGGNVD-------KSATTSNS----VTPATSAAPSPAPASEKGEDKD---------- 1576
            |||..||...|.:.       :||...:|    :.|.......|....||.|.::          
 Frog  1514 VAASPAPMPPGVITMAEKCDAQSAMQDDSEMVELKPKYPTEAQPTAKQEKSEQEEINEDLDIKEM 1578

  Fly  1577 --KDSEKEKDKTSAEKSEVKQEQEAEEDKKPGDVKQENPVEEAAGDTKPSDAEVKTEVAKTEPKE 1639
              ||.|::::|.||:::. |..:..||.:||.:                     |:::..|..|.
 Frog  1579 KIKDIEQDEEKESADQNS-KAAETHEEQEKPSE---------------------KSDLCVTLNKM 1621

  Fly  1640 ETKDPEVKEEPKTEEKEKEKVDDKKPIPPTTVIDDDDDDVMIVKEDGELEKPSASSPKDQKAVAA 1704
            |.|:|:..|:.|.:|||:.:..           .:.::|  |.:||.|.:|...:.         
 Frog  1622 EDKEPKTGEDDKPDEKEECETH-----------QNGEND--IKQEDDEGKKEDKNG--------- 1664

  Fly  1705 ATSAATGATGKGAEDSLEVLKRKFMFNIADGGFTELHTLWLNEEKAAV-PGREYEIWHRRHDYWL 1768
                                |.||||||||||||||||||.|||:||: .|:.|:||||||||||
 Frog  1665 --------------------KFKFMFNIADGGFTELHTLWQNEERAAISSGKIYDIWHRRHDYWL 1709

  Fly  1769 LAGIVTHGYGRWQDIQNDIRFAIINEPFKMDVGKGNFLEIKNKFLARRFKLLEQALVIEEQLRRA 1833
            |||||||||.||||||||.|:.|:|||||.::.|||:||:|||||||||||||||||||||||||
 Frog  1710 LAGIVTHGYARWQDIQNDPRYLILNEPFKSEIHKGNYLEMKNKFLARRFKLLEQALVIEEQLRRA 1774

  Fly  1834 AYLNLAQDPSHPAMSLNARFAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKSD 1898
            ||||:.|||:||||:||||.|||||||||||||||||||||||||||||||||||||||||||:|
 Frog  1775 AYLNMTQDPNHPAMALNARLAEVECLAESHQHLSKESLAGNKPANAVLHKVLNQLEELLSDMKAD 1839

  Fly  1899 VSRLPATLARIPPVAQRLQMSERSILSRLAATAGNASNAAQLMAQFPAGFQGTTLPAFTSGPAGN 1963
            |:|||:.|:||||||.|||||||||||||....|:.:            .||      |.|.:..
 Frog  1840 VTRLPSMLSRIPPVAARLQMSERSILSRLTNRGGDPT------------VQG------TFGSSQL 1886

  Fly  1964 FANFRPQFSVPG 1975
            :.||.|.|..||
 Frog  1887 YNNFGPSFRGPG 1898

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mi-2NP_001014591.1 CHDNT 138..190 CDD:285335 23/51 (45%)
PHD1_CHD_II 380..422 CDD:277006 37/41 (90%)
PHD2_CHD_II 440..482 CDD:277007 32/41 (78%)
CHROMO 490..558 CDD:237991 25/78 (32%)
CHROMO 615..667 CDD:214605 21/54 (39%)
SNF2_N 734..1028 CDD:278600 222/295 (75%)
DEXDc 751..907 CDD:238005 118/157 (75%)
Helicase_C 1053..1167 CDD:278689 102/113 (90%)
DUF1087 <1292..1337 CDD:283996 32/44 (73%)
DUF1086 1380..1517 CDD:283992 112/136 (82%)
CHDCT2 1756..1927 CDD:285336 146/170 (86%)
chd5XP_031761592.1 CHDNT 142..192 CDD:400425 23/49 (47%)
PHD1_CHD_II 337..379 CDD:277006 37/41 (90%)
PHD2_CHD_II 412..454 CDD:277007 32/41 (78%)
CD1_tandem_CHD3-4_like 459..535 CDD:349314 26/80 (33%)
CD2_tandem_CHD3-4_like 580..634 CDD:349309 23/56 (41%)
PLN03142 686..>1189 CDD:215601 391/502 (78%)
DEXHc_CHD5 688..919 CDD:350815 171/230 (74%)
DUF1087 1263..1316 CDD:399459 38/53 (72%)
DUF1086 1351..1492 CDD:368921 113/140 (81%)
MDN1 <1530..1664 CDD:227596 36/168 (21%)
CHDCT2 1697..1823 CDD:400426 107/125 (86%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 441 1.000 Domainoid score I538
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H56712
Inparanoid 1 1.050 1992 1.000 Inparanoid score I54
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D35578at33208
OrthoFinder 1 1.000 - - FOG0000546
OrthoInspector 1 1.000 - - otm47866
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X547
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.060

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